Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 3.7e-213 744.6 370 100.0
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.6e-161 570.5 395 77.7
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-160 569.3 395 77.7
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-160 568.9 395 77.5
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-160 568.9 401 76.1
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.9e-159 564.3 390 77.4
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 1.2e-155 553.5 395 75.7
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 6.1e-131 471.5 395 67.3
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 4.3e-129 465.3 396 64.1
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 5.7e-129 464.9 396 62.6
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 7.4e-129 464.5 396 62.1
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 9.7e-129 464.2 396 63.6
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 6.9e-127 458.0 398 63.8
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.2e-125 453.0 376 67.6
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 6.5e-125 451.4 395 61.0
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 7.2e-124 448.0 396 60.9
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 1.4e-122 443.7 398 60.8
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.8e-122 443.4 395 60.3
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 3.9e-122 442.2 397 59.9
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 4.8e-120 435.3 418 57.2
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.1e-119 434.1 415 57.6
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.4e-119 433.7 408 57.8
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 2.4e-119 433.0 396 59.8
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.4e-119 433.0 398 59.5
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 3.1e-119 432.6 397 59.9
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 4.1e-119 432.2 397 58.9
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 9.1e-119 431.0 397 58.7
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 9.1e-119 431.0 398 59.3
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 1.2e-118 430.6 399 58.6
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 1.2e-118 430.6 396 59.1
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 4.5e-118 428.7 397 57.9
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.3e-117 427.2 394 57.1
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-117 426.8 450 57.6
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.7e-117 426.8 399 58.6
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 5.0e-117 425.2 395 59.0
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 8.5e-117 424.5 400 57.8
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 1.1e-116 424.1 460 56.7
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 1.5e-116 423.7 396 59.3
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 2.5e-116 422.9 396 57.8
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 5.5e-116 421.8 395 58.2
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 7.2e-116 421.4 396 57.6
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 9.4e-116 421.0 396 57.1
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 9.4e-116 421.0 397 57.2
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.2e-115 420.6 397 57.7
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 1.2e-115 420.6 419 55.8
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 1.6e-115 420.2 397 57.9
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-115 420.2 388 63.7
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 3.6e-115 419.1 396 57.3
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 6.1e-115 418.3 396 57.1
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 8.0e-115 417.9 396 56.6
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 8.0e-115 417.9 398 56.8
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 2.3e-114 416.4 396 57.8
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 3.9e-114 415.6 396 57.8
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 5.2e-114 415.2 396 56.8
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 5.2e-114 415.2 417 55.6
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.7e-114 414.8 388 62.9
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 1.1e-113 414.1 395 57.5
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 1.5e-113 413.7 395 58.0
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 2.6e-113 412.9 466 51.1
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 3.3e-113 412.5 396 56.8
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 5.7e-113 411.8 396 56.6
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 9.7e-113 411.0 395 56.5
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.3e-112 410.6 419 53.7
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 3.7e-112 409.1 391 62.7
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 6.3e-112 408.3 397 56.2
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 3.1e-111 406.0 396 56.6
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 4.1e-111 405.6 396 57.3
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 9.1e-111 404.4 397 55.2
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.6e-110 403.7 402 55.0
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.6e-110 403.7 395 55.2
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 2.6e-110 402.9 396 56.6
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 3.5e-110 402.5 397 53.9
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 7.7e-110 401.4 396 56.1
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-109 400.6 440 55.0
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 2.9e-109 399.4 396 55.1
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 3.8e-109 399.1 396 53.8
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 5.0e-109 398.7 396 53.8
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 8.5e-109 397.9 419 52.7
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.2e-107 394.0 391 57.0
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 1.6e-107 393.7 406 54.9
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 2.1e-107 393.3 396 55.1
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 2.7e-107 392.9 396 56.1
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 4.7e-107 392.1 405 54.6
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.8e-106 390.2 396 54.0
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.2e-105 387.5 433 54.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 2.6e-105 386.3 405 54.1
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.4e-105 385.6 395 53.4
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.3e-104 384.0 466 47.9
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 6.3e-104 381.7 396 54.3
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 4.5e-102 375.6 389 52.4
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.1e-100 370.9 380 59.2
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 1.0e-98 364.4 394 52.5
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 4.4e-97 359.0 394 52.3
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 5.7e-97 358.6 366 59.8
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 3.7e-96 355.9 394 52.0
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-96 355.9 391 57.3
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 5.4e-95 352.1 354 54.5
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 9.1e-95 351.3 390 51.8
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 1.0e-93 347.8 394 51.5
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 3.8e-93 345.9 392 50.3
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 3.8e-93 345.9 356 55.3
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 5.0e-93 345.5 390 51.5
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 5.0e-93 345.5 377 52.5
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 1.5e-92 344.0 426 49.8
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 3.3e-92 342.8 392 50.3
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 7.2e-92 341.7 392 51.3
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 9.5e-92 341.3 432 47.5
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 1.6e-91 340.5 414 49.3
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 4.7e-91 339.0 398 47.5
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 2.6e-89 333.2 398 48.0
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 3.2e-87 326.2 468 43.2
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.0e-85 321.2 369 52.8
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 6.6e-85 318.5 357 52.1
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 1.5e-81 307.4 350 51.1
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 1.7e-80 303.9 400 45.2
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 3.7e-80 302.8 319 54.2
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 2.8e-75 286.6 388 47.2
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 2.1e-70 270.4 294 52.4
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.0e-69 266.5 349 47.0
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 3.9e-69 266.2 372 43.8
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 1.1e-68 264.6 380 45.5
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 4.3e-68 262.7 318 49.7
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 4.7e-67 259.2 350 46.3
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 6.4e-64 248.8 374 43.9
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 1.9e-63 247.3 405 44.9
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 2.4e-63 246.9 438 37.4
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 5.1e-61 239.2 261 52.1
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 5.1e-61 239.2 214 57.9
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 4.3e-60 236.1 387 39.8
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 4.7e-59 232.6 366 42.3
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 5.2e-58 229.2 356 41.9
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.5e-57 227.6 348 42.8
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 4.2e-55 219.5 353 38.8
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.8e-51 206.1 293 43.0
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 2.9e-48 196.8 130 72.3
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.4e-47 193.7 290 43.8
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 2.4e-47 193.7 406 36.0
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 5.4e-47 192.6 131 73.3
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 2.1e-46 190.7 142 68.3
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.7e-46 190.3 338 39.3
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-45 188.3 291 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 2.4e-42 177.2 217 44.2
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.2e-41 174.9 129 68.2
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 8.4e-40 168.7 117 69.2
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 7.9e-38 162.2 311 34.4
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.1e-37 159.5 412 32.0
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.3e-36 156.8 78 84.6
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.8e-29 134.4 185 42.7
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-26 124.4 176 45.5
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.5e-25 119.8 110 54.5
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 7.4e-20 102.4 83 61.4
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 3.7e-19 100.1 79 65.8
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.0e-16 89.7 74 55.4
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.1e-15 88.6 61 62.3
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.2e-14 85.1 110 45.5
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 1.8e-13 81.3 85 49.4
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 1.8e-13 81.3 85 49.4
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.9e-13 80.1 77 51.9
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.9e-13 80.1 77 51.9
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.9e-13 80.1 60 65.0
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 3.3e-12 77.0 117 41.9
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 3.3e-12 77.0 47 72.3
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.3e-11 75.1 57 63.2
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 3.7e-11 73.6 112 40.2
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 6.3e-11 72.8 117 38.5
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 6.3e-11 72.8 117 38.5
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 4.1e-10 70.1 93 43.0
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.3e-10 69.7 47 70.2
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-08 65.5 69 46.4
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 5.0e-08 63.2 93 43.0
Gorai.006G016000 Gossypium raimondii HOM05D003934 ORTHO05D047738 6.5e-08 62.8 72 50.0
Sabra11G0089700 Salix brachista HOM05D001236 ORTHO05D001090 7.2e-07 59.3 91 38.5


User provided reference genes

Program Settings