Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 1.5e-184 649.4 335 100.0
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.0e-145 518.8 374 76.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.0e-145 518.8 374 76.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.9e-145 518.5 374 76.2
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-143 513.5 373 76.1
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-143 513.5 374 75.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 9.4e-131 470.7 341 76.0
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 2.2e-103 379.8 381 59.3
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.4e-94 349.7 386 54.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.5e-91 340.5 384 54.7
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 3.3e-91 339.3 386 53.4
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.6e-90 337.0 399 54.1
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.8e-89 333.6 392 53.6
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 1.8e-86 323.6 387 52.2
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.8e-86 323.6 390 53.1
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 8.0e-82 308.1 402 49.0
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.4e-81 307.4 406 50.2
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 1.8e-81 307.0 381 51.2
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.3e-79 300.8 394 48.5
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 2.2e-79 300.1 371 49.9
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 2.9e-79 299.7 386 50.5
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 3.7e-79 299.3 390 50.3
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 6.4e-79 298.5 395 49.6
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 6.4e-79 298.5 364 51.9
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 8.3e-79 298.1 395 48.9
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 1.1e-78 297.7 400 48.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 2.4e-78 296.6 383 49.6
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 9.2e-78 294.7 390 49.7
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 2.7e-77 293.1 393 48.3
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.0e-76 291.2 384 49.5
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 1.3e-76 290.8 384 49.5
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.3e-76 290.8 383 49.3
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.3e-76 290.0 335 53.4
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 2.3e-76 290.0 380 50.5
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 6.6e-76 288.5 319 55.2
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.5e-75 287.3 352 50.3
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 1.9e-75 287.0 389 47.6
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 2.5e-75 286.6 376 50.0
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 3.3e-75 286.2 390 48.2
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 3.3e-75 286.2 380 49.5
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.3e-75 286.2 355 51.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 4.3e-75 285.8 388 46.9
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 4.3e-75 285.8 390 47.9
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 9.5e-75 284.6 384 49.5
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 2.8e-74 283.1 378 47.4
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.8e-74 283.1 388 47.2
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.6e-74 282.7 394 47.5
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 4.7e-74 282.3 323 55.4
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 8.1e-74 281.6 382 49.0
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 1.8e-73 280.4 391 46.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 3.1e-73 279.6 354 49.2
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 8.9e-73 278.1 371 48.2
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 8.9e-73 278.1 381 47.2
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 3.4e-72 276.2 379 48.0
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 3.4e-72 276.2 300 55.7
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 5.8e-72 275.4 363 48.5
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 7.5e-72 275.0 385 47.5
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.3e-71 274.2 352 49.7
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 1.7e-71 273.9 374 48.1
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.7e-71 273.9 366 48.4
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.9e-71 273.1 384 47.7
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.9e-71 273.1 396 47.7
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 2.9e-71 273.1 309 54.7
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 3.7e-71 272.7 374 47.6
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 8.3e-71 271.6 360 46.7
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.1e-70 271.2 402 46.8
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.4e-70 270.8 369 45.8
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 2.4e-70 270.0 385 45.2
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 4.1e-70 269.2 366 47.3
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 5.4e-70 268.9 377 48.0
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 7.1e-70 268.5 341 48.1
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.6e-69 267.3 376 47.1
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.6e-69 267.3 376 47.1
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 1.6e-69 267.3 327 51.1
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.6e-69 267.3 377 47.5
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 2.1e-69 266.9 375 47.2
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 6.0e-69 265.4 334 49.7
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 2.3e-68 263.5 339 49.0
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 1.1e-67 261.2 386 45.6
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.1e-67 261.2 376 45.5
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.9e-67 260.4 403 43.4
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 4.3e-67 259.2 386 45.9
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 4.3e-67 259.2 348 48.3
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 9.5e-67 258.1 389 45.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 8.1e-66 255.0 164 78.0
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.1e-65 254.6 384 45.3
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 1.8e-65 253.8 350 46.3
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 1.8e-65 253.8 407 42.5
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 2.4e-65 253.4 394 43.9
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 2.0e-64 250.4 378 44.2
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 2.0e-64 250.4 378 44.2
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.6e-64 250.0 388 42.8
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 2.6e-64 250.0 378 44.2
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 5.8e-64 248.8 380 44.7
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 5.8e-64 248.8 380 44.7
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.8e-64 248.8 162 77.8
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.3e-63 247.7 362 45.0
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.3e-63 247.7 367 45.8
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.7e-63 247.3 382 42.9
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.7e-63 247.3 409 41.3
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.9e-63 246.5 162 74.7
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.8e-63 246.1 162 74.1
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.1e-62 244.6 395 43.0
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.1e-62 244.6 390 41.8
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.6e-61 240.7 397 42.6
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.0e-60 238.0 347 46.4
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.3e-60 237.7 163 75.5
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 3.0e-60 236.5 364 44.2
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 8.7e-60 235.0 402 41.0
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.1e-59 234.6 402 40.8
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-59 234.2 377 45.4
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 1.9e-59 233.8 241 56.4
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 5.6e-59 232.3 357 45.1
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.2e-58 231.1 164 73.2
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.2e-58 231.1 237 54.9
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 8.1e-58 228.4 387 44.7
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.1e-57 228.0 283 51.2
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 3.1e-57 226.5 250 54.0
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 6.9e-57 225.3 268 50.0
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 9.0e-57 224.9 377 40.8
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.2e-56 224.6 322 47.5
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.4e-56 223.0 418 41.1
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 4.4e-56 222.6 164 69.5
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 5.8e-56 222.2 380 40.3
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 2.2e-55 220.3 213 60.1
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 8.4e-55 218.4 163 66.9
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 1.4e-54 217.6 347 45.0
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.2e-54 216.5 309 46.6
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 9.3e-54 214.9 156 73.1
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 4.6e-53 212.6 141 79.4
FAN25G2354 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.6e-53 212.6 141 79.4
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.0e-53 212.2 156 71.8
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 3.0e-52 209.9 280 46.4
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 6.6e-52 208.8 235 51.9
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 3.3e-51 206.5 312 46.8
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 9.6e-51 204.9 254 48.0
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 1.4e-49 201.1 130 76.9
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 2.4e-46 190.3 155 64.5
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 7.1e-46 188.7 161 61.5
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 2.3e-44 183.7 155 61.3
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 5.1e-44 182.6 162 61.1
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 8.7e-44 181.8 170 57.6
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 4.3e-43 179.5 162 61.1
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 1.3e-42 177.9 117 75.2
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.4e-41 174.5 336 39.6
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 2.0e-40 170.6 195 49.7
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 1.4e-38 164.5 121 65.3
Nitab4.5_0012104g0020 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.2e-37 161.4 119 69.7
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 1.5e-35 154.5 260 39.6
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.1e-30 138.3 314 37.6
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 9.7e-27 125.2 212 39.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 3.2e-22 110.2 158 43.7
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 4.2e-22 109.8 258 37.6
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.2e-21 108.2 87 69.0
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 2.7e-21 107.1 85 62.4
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.0e-20 105.1 158 42.4
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.0e-20 103.6 205 38.5
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 9.7e-19 98.6 126 51.6
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 9.7e-19 98.6 231 34.2
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 6.9e-17 92.4 88 56.8
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 5.5e-14 82.8 63 73.0
Nitab4.5_0000914g0160 Nicotiana tabacum HOM05D003093 ORTHO05D023197 8.8e-12 75.5 142 41.5
Aqoxy7G01480 Aquilegia oxysepala HOM05D003093 ORTHO05D077548 6.3e-10 69.3 136 38.2
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.0e-07 62.0 43 74.4
Psat2g026440 Pisum sativum HOM05D016485 ORTHO05D000844 2.2e-07 60.8 79 45.6
Psat2g026480 Pisum sativum HOM05D016485 ORTHO05D000844 2.2e-07 60.8 79 45.6
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 2.9e-07 60.5 61 59.0
Psat5g261640 Pisum sativum HOM05D003093 ORTHO05D004301 5.5e-06 56.2 53 54.7
AT3G55935 Arabidopsis thaliana HOM05D003093 ORTHO05D082148 7.2e-06 55.8 41 68.3
AT3G56790 Arabidopsis thaliana HOM05D003093 ORTHO05D082132 7.2e-06 55.8 64 51.6


User provided reference genes

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