Gene: AT3G56790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56790
  • Transcript Identifier AT3G56790.1
  • Gene Type Coding gene
  • Location Chr3 : 21033835-21034455 : negative

Gene Family Information

  • ID HOM05D003093
  • #Genes/#Species 222/98
  • Phylogenetic origin
  • ID ORTHO05D082132
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56790.1
  • uniprot Q9LES8

Descriptions

  • Description RNA splicing factor-like protein
  • Computational description RNA splicing factor-related; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 356 Blast hits to 326 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 116; Plants - 74; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
Gene OntologymRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0046540
IEA
Gene OntologyU4/U6 x U5 tri-snRNP complex
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013881 Pre-mRNA-splicing factor 3
IPR027104 U4/U6 small nuclear ribonucleoprotein Prp3
Mapman id Description
35.1 not assigned.annotated