Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.4e-231 803.5 408 100.0
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-195 686.4 476 78.6
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-193 679.1 476 77.7
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 7.3e-186 654.1 480 75.2
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-169 599.0 480 70.8
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-160 570.1 498 64.5
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-160 570.1 498 64.5
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.0e-160 568.5 498 64.3
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 4.0e-160 568.5 499 64.5
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 1.8e-144 516.5 491 60.3
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 1.5e-143 513.5 498 59.8
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 2.6e-143 512.7 498 59.8
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 1.4e-141 506.9 500 59.6
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 4.2e-141 505.4 502 57.8
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 7.9e-140 501.1 498 58.0
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 3.0e-139 499.2 498 57.0
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 5.1e-139 498.4 498 58.2
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 6.7e-139 498.0 498 55.2
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 6.7e-139 498.0 498 58.0
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.5e-138 496.9 498 55.0
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 2.5e-138 496.1 498 57.8
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 3.3e-138 495.7 499 58.7
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.3e-138 495.7 514 56.8
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 5.6e-138 495.0 498 55.8
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 7.4e-138 494.6 494 57.9
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 9.6e-138 494.2 500 57.4
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 9.6e-138 494.2 500 57.4
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 1.3e-137 493.8 499 57.7
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 6.2e-137 491.5 498 56.2
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 1.1e-136 490.7 498 56.4
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 3.1e-136 489.2 498 57.8
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 4.0e-136 488.8 499 57.1
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 4.0e-136 488.8 499 57.3
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 5.3e-136 488.4 500 57.2
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 5.3e-136 488.4 498 54.6
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 9.0e-136 487.6 498 57.2
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-135 487.3 498 57.0
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.0e-135 486.5 498 56.8
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.0e-135 486.5 498 56.2
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 2.0e-135 486.5 497 57.5
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 2.0e-135 486.5 498 56.0
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.4e-135 485.7 498 57.0
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 4.5e-135 485.3 498 56.4
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.0e-134 484.2 499 57.1
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.3e-134 483.8 498 53.2
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 2.2e-134 483.0 498 56.4
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.4e-133 480.3 499 57.1
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.4e-133 480.3 499 56.7
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 2.5e-133 479.6 494 54.0
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 2.5e-133 479.6 498 55.8
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 1.2e-132 477.2 500 56.6
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.2e-132 477.2 500 56.2
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.6e-132 476.9 498 56.6
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 2.1e-132 476.5 498 56.0
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 1.0e-131 474.2 500 53.0
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 5.1e-131 471.9 499 56.1
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 1.5e-130 470.3 499 54.5
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 1.9e-130 469.9 499 52.7
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 2.5e-130 469.5 498 54.8
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 4.3e-130 468.8 498 55.2
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.7e-130 468.4 495 54.9
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 9.7e-130 467.6 499 54.3
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 1.6e-129 466.8 500 51.8
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.8e-129 466.1 498 54.6
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 2.8e-129 466.1 498 54.8
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 4.8e-129 465.3 493 54.0
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 4.8e-129 465.3 498 52.6
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.4e-128 463.8 496 53.2
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.4e-128 463.8 499 55.3
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 1.8e-128 463.4 499 53.3
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.8e-128 463.4 499 54.9
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 1.8e-128 463.4 469 57.1
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 3.1e-128 462.6 499 53.3
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 3.1e-128 462.6 501 54.7
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 4.1e-128 462.2 494 51.8
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 4.1e-128 462.2 495 54.3
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 2.6e-127 459.5 501 54.1
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 2.6e-127 459.5 501 52.9
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 7.7e-127 458.0 497 53.5
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 1.4e-125 453.8 498 53.4
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 1.9e-125 453.4 498 53.8
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 2.5e-125 453.0 498 53.2
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.1e-124 449.9 496 53.2
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 4.6e-124 448.7 501 52.7
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 1.4e-123 447.2 547 49.7
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.7e-123 444.9 504 50.0
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 2.5e-122 443.0 505 51.5
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 2.5e-122 443.0 473 54.5
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 1.4e-120 437.2 496 51.0
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 5.3e-120 435.3 438 58.9
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 2.0e-119 433.3 500 48.8
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-119 433.3 567 45.5
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.7e-118 430.3 472 54.7
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 3.8e-118 429.1 500 48.6
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 6.5e-118 428.3 499 48.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 1.9e-117 426.8 503 48.5
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 9.4e-117 424.5 500 51.6
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 6.1e-116 421.8 499 48.5
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 2.3e-115 419.9 499 50.3
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 1.4e-112 410.6 525 49.7
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 9.1e-112 407.9 391 58.3
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.2e-111 407.5 507 50.3
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.2e-103 380.9 450 49.8
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-103 378.6 478 50.6
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.0e-98 363.6 411 53.5
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 4.8e-97 359.0 425 49.9
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 7.0e-96 355.1 514 48.6
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 2.0e-95 353.6 377 54.9
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 2.1e-92 343.6 493 45.0
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.6e-90 336.7 467 48.6
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 1.3e-89 334.3 412 45.9
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-89 334.0 469 48.4
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.5e-87 326.2 410 51.2
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-86 324.3 402 53.7
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-86 323.9 422 50.0
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 5.0e-86 322.4 369 52.8
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 8.6e-86 321.6 526 40.5
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 2.1e-84 317.0 420 43.1
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.8e-83 312.0 372 45.2
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 2.4e-80 303.5 411 49.4
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 9.2e-80 301.6 413 47.2
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 5.9e-79 298.9 520 42.3
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-78 298.1 370 47.6
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 1.7e-78 297.4 487 41.7
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.9e-77 293.9 391 43.7
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 2.5e-77 293.5 533 36.6
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 4.0e-75 286.2 413 43.1
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 2.0e-74 283.9 413 43.1
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 7.5e-74 282.0 462 39.2
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.9e-72 277.3 306 52.0
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 4.1e-72 276.2 446 44.4
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.2e-71 274.6 262 58.8
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 3.5e-71 273.1 263 57.0
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.5e-69 267.7 407 42.5
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 6.8e-67 258.8 465 41.5
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 5.8e-66 255.8 498 35.9
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 8.3e-65 251.9 156 74.4
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 1.4e-64 251.1 261 54.4
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 4.6e-63 246.1 157 74.5
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.6e-61 239.2 152 74.3
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 1.6e-60 237.7 538 31.0
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 2.1e-60 237.3 156 78.2
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 2.0e-58 230.7 415 41.2
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.0e-55 219.2 338 40.8
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.3e-53 213.4 373 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 6.2e-52 209.1 264 44.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.9e-49 200.3 500 32.6
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.8e-41 173.3 124 61.3
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.3e-38 164.9 177 46.9
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.5e-34 151.4 198 46.5
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 1.4e-24 118.2 384 28.4
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 4.2e-24 116.7 85 62.4
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 7.1e-24 115.9 384 27.9
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 2.7e-23 114.0 385 28.6
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 2.7e-23 114.0 385 28.6
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.0e-23 112.8 92 57.6
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.9e-22 110.2 90 54.4
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.1e-19 100.5 93 51.6
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.1e-19 100.5 93 51.6
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 4.5e-18 96.7 130 43.1
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 4.6e-15 86.7 66 65.2
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.5e-13 81.6 65 66.2
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-12 78.6 118 44.9
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.4e-11 75.1 115 43.5
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 5.3e-11 73.2 83 49.4
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 4.5e-10 70.1 50 64.0
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.2e-09 67.8 59 54.2
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.4e-08 65.1 63 47.6
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 2.1e-07 61.2 67 50.7
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 2.1e-07 61.2 67 50.7
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 2.7e-07 60.8 49 57.1
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.6e-07 60.1 63 55.6


User provided reference genes

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