Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 1.5e-43 179.1 88 100.0
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.5e-43 179.1 88 100.0
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.5e-43 179.1 88 100.0
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.5e-43 179.1 88 100.0
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 2.8e-42 174.9 88 96.6
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 95.5
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 95.5
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 94.3
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 95.5
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.4e-41 172.6 87 95.4
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.4e-41 172.6 87 95.4
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 95.5
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 2.4e-41 171.8 88 94.3
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 2.4e-41 171.8 88 94.3
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 2.4e-41 171.8 88 94.3
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 2.4e-41 171.8 88 94.3
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.1e-41 171.4 88 94.3
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.1e-41 171.4 88 94.3
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.1e-41 171.4 88 94.3
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 95.4
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 4.0e-41 171.0 88 93.2
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 4.0e-41 171.0 88 94.3
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 95.4
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 95.4
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 5.3e-41 170.6 88 94.3
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 5.3e-41 170.6 88 94.3
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 6.9e-41 170.2 88 93.2
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 94.3
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 94.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 94.3
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 94.3
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 94.3
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 9.0e-41 169.9 88 93.2
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 9.0e-41 169.9 88 93.2
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 1.2e-40 169.5 87 93.1
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.2e-40 169.5 88 93.2
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 1.2e-40 169.5 88 92.0
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 1.2e-40 169.5 88 92.0
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 1.2e-40 169.5 88 92.0
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 1.5e-40 169.1 85 95.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 88 92.0
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 2.0e-40 168.7 88 92.0
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 2.6e-40 168.3 85 94.1
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 2.6e-40 168.3 87 93.1
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.6e-40 168.3 89 94.4
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.6e-40 168.3 89 94.4
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 2.6e-40 168.3 89 94.4
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 2.6e-40 168.3 88 92.0
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 3.4e-40 167.9 85 92.9
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 3.4e-40 167.9 88 92.0
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 3.4e-40 167.9 88 92.0
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 3.4e-40 167.9 88 90.9
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 3.4e-40 167.9 84 95.2
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 4.5e-40 167.5 88 90.9
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 4.5e-40 167.5 85 95.3
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.5e-40 167.5 85 92.9
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 5.8e-40 167.2 88 90.9
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 5.8e-40 167.2 87 93.1
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 5.8e-40 167.2 87 93.1
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 5.8e-40 167.2 87 93.1
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 7.6e-40 166.8 88 92.0
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 7.6e-40 166.8 86 93.0
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 9.9e-40 166.4 85 92.9
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.2e-39 165.2 87 90.8
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 2.2e-39 165.2 83 95.2
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 2.9e-39 164.9 83 94.0
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 2.9e-39 164.9 85 91.8
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 4.9e-39 164.1 85 92.9
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 8.4e-39 163.3 83 92.8
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 2.4e-38 161.8 101 81.2
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.4e-38 161.8 82 95.1
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.4e-38 161.8 82 95.1
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.4e-38 161.8 82 95.1
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 4.2e-38 161.0 88 85.2
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.6e-37 159.1 81 92.6
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 3.5e-37 157.9 84 88.1
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 4.6e-37 157.5 77 100.0
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 4.6e-37 157.5 77 100.0
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 7.9e-37 156.8 84 89.3
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 1.0e-36 156.4 84 88.1
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 1.0e-36 156.4 78 97.4
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 2.3e-36 155.2 80 92.5
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 5.1e-36 154.1 83 92.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 6.7e-36 153.7 86 87.2
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 6.7e-36 153.7 85 82.4
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 8.7e-36 153.3 77 96.1
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 1.5e-35 152.5 77 94.8
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.3e-35 151.4 82 85.4
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 4.3e-35 151.0 77 93.5
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 2.1e-34 148.7 77 92.2
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 1.2e-32 142.9 82 75.6
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 6.0e-29 130.6 85 77.6
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 8.7e-28 126.7 108 63.9
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 4.3e-27 124.4 63 96.8
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 5.6e-27 124.0 87 75.9
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 3.1e-25 118.2 59 93.2
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 4.9e-23 110.9 77 61.0
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.1e-22 109.8 63 87.3
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.9e-22 109.0 72 79.2
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 3.5e-21 104.8 53 94.3
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 1.0e-20 103.2 53 94.3
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 1.0e-20 103.2 51 94.1
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 6.7e-20 100.5 51 92.2
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 8.7e-20 100.1 49 95.9
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 2.5e-19 98.6 52 88.5
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 1.6e-18 95.9 48 91.7
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 1.8e-12 75.9 88 51.1
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 9.1e-09 63.5 34 85.3
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 7.7e-08 60.5 29 89.7
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 5.5e-06 54.3 79 38.0
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 9.4e-06 53.5 77 39.0
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 9.4e-06 53.5 77 37.7


User provided reference genes

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