Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-37 156.8 77 100.0
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 4.5e-36 154.1 77 97.4
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 5.8e-36 153.7 77 96.1
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 5.8e-36 153.7 77 96.1
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 5.8e-36 153.7 77 96.1
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 9.9e-36 152.9 77 96.1
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 1.3e-35 152.5 77 96.1
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.7e-35 152.1 76 97.4
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 1.7e-35 152.1 76 97.4
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.7e-35 152.1 77 94.8
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 1.7e-35 152.1 77 96.1
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 1.7e-35 152.1 77 96.1
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 2.2e-35 151.8 77 94.8
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 2.2e-35 151.8 77 94.8
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 2.2e-35 151.8 77 96.1
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 2.2e-35 151.8 77 96.1
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 3.8e-35 151.0 76 96.1
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.8e-35 151.0 76 96.1
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.8e-35 151.0 76 96.1
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 3.8e-35 151.0 76 96.1
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 3.8e-35 151.0 77 94.8
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 3.8e-35 151.0 77 94.8
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 3.8e-35 151.0 77 96.1
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 94.8
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 94.8
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 93.5
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 93.5
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 93.5
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.9e-35 150.6 77 93.5
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 6.4e-35 150.2 77 93.5
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 6.4e-35 150.2 77 93.5
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 6.4e-35 150.2 76 96.1
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 6.4e-35 150.2 75 97.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 8.4e-35 149.8 77 94.8
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 8.4e-35 149.8 77 92.2
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 8.4e-35 149.8 77 93.5
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 8.4e-35 149.8 76 94.7
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 1.1e-34 149.4 76 94.7
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.1e-34 149.4 78 96.2
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.1e-34 149.4 78 96.2
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 1.1e-34 149.4 78 96.2
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 1.1e-34 149.4 78 96.2
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 1.1e-34 149.4 77 93.5
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 1.4e-34 149.1 76 94.7
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 1.4e-34 149.1 77 93.5
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 1.4e-34 149.1 77 93.5
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 1.4e-34 149.1 77 93.5
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 1.4e-34 149.1 77 92.2
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.9e-34 148.7 77 92.2
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 1.9e-34 148.7 76 94.7
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 2.4e-34 148.3 77 92.2
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.4e-34 148.3 77 92.2
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 2.4e-34 148.3 75 96.0
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 3.2e-34 147.9 77 92.2
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.2e-34 147.5 76 92.1
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.2e-34 147.5 76 92.1
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 4.2e-34 147.5 76 93.4
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 9.3e-34 146.4 75 93.3
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 9.3e-34 146.4 76 92.1
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 9.3e-34 146.4 75 93.3
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.1e-33 145.2 75 94.7
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.1e-33 145.2 75 94.7
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.1e-33 145.2 75 94.7
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 1.0e-32 142.9 90 81.1
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 1.8e-32 142.1 77 85.7
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 3.9e-32 141.0 76 88.2
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 8.7e-32 139.8 76 89.5
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 8.7e-32 139.8 77 84.4
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 1.1e-31 139.4 76 88.2
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 4.3e-31 137.5 77 81.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.7e-30 134.4 75 88.0
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 2.0e-28 128.6 75 76.0
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 1.7e-27 125.6 107 64.5
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 2.7e-25 118.2 59 93.2
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 4.6e-25 117.5 77 79.2
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 6.7e-24 113.6 77 76.6
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 1.8e-21 105.5 52 100.0
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.4e-21 105.1 74 60.8
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 6.9e-21 103.6 52 96.2
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 9.0e-21 103.2 51 94.1
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 2.0e-20 102.1 52 96.2
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 2.6e-20 101.7 66 80.3
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 5.9e-20 100.5 51 92.2
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 7.6e-20 100.1 49 95.9
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 2.2e-19 98.6 52 88.5
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 1.4e-18 95.9 48 91.7
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.6e-17 92.4 52 88.5
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 6.7e-08 60.5 29 89.7
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 9.7e-07 56.6 77 46.8


User provided reference genes

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