Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.7e-135 484.6 251 100.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.1e-88 330.5 174 97.7
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 9.6e-88 327.4 597 40.9
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 2.8e-87 325.9 174 97.1
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.8e-87 325.9 174 97.1
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.6e-87 325.5 609 40.6
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 2.8e-79 299.3 174 87.9
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 4.8e-63 245.4 170 72.4
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 8.2e-63 244.6 172 73.3
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.6e-61 239.6 170 70.0
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.7e-60 236.9 171 70.8
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 3.2e-59 232.6 174 70.7
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 7.2e-59 231.5 171 72.5
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 3.6e-58 229.2 175 69.1
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 4.6e-58 228.8 170 69.4
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 7.9e-58 228.0 171 67.8
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 1.8e-57 226.9 172 66.9
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 1.8e-57 226.9 165 70.3
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.3e-57 226.5 258 51.2
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 3.9e-57 225.7 178 66.3
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 5.1e-57 225.3 170 69.4
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 5.1e-57 225.3 164 70.1
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 6.7e-57 224.9 168 67.3
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 1.1e-56 224.2 172 68.6
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 2.5e-56 223.0 170 67.6
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 3.3e-56 222.6 163 68.7
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 4.3e-56 222.2 171 67.3
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 5.7e-56 221.9 163 69.9
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 5.7e-56 221.9 166 67.5
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 5.7e-56 221.9 167 67.7
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 5.7e-56 221.9 170 66.5
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 7.4e-56 221.5 163 69.9
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 2.8e-55 219.5 167 67.1
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 2.8e-55 219.5 167 68.3
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.7e-55 219.2 170 62.4
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 3.7e-55 219.2 178 64.0
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 1.1e-54 217.6 166 65.7
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.1e-54 217.6 172 63.4
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 1.1e-54 217.6 167 66.5
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.4e-54 217.2 178 62.9
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 1.8e-54 216.9 163 68.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 1.8e-54 216.9 171 65.5
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 5.3e-54 215.3 166 65.1
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 9.1e-54 214.5 170 62.9
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.5e-53 213.8 178 62.9
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 2.0e-53 213.4 174 63.8
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 2.6e-53 213.0 167 67.1
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.5e-53 212.2 164 66.5
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 4.5e-53 212.2 163 66.9
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 4.5e-53 212.2 163 66.3
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 7.7e-53 211.5 176 63.1
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 7.7e-53 211.5 169 65.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 2.2e-52 209.9 166 62.0
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.9e-52 209.5 163 66.3
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 2.9e-52 209.5 179 62.6
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 3.8e-52 209.1 186 60.2
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.8e-52 209.1 164 65.9
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.1e-51 207.6 186 61.8
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.9e-51 206.8 171 60.2
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 5.5e-51 205.3 171 60.8
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.5e-51 205.3 160 66.2
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 9.4e-51 204.5 165 64.2
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.2e-50 204.1 175 60.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.1e-50 203.4 173 61.3
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.7e-50 203.0 175 60.6
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 3.6e-50 202.6 167 62.3
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 3.9e-49 199.1 163 61.3
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 6.7e-49 198.4 166 63.9
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 6.7e-49 198.4 172 57.0
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 7.4e-48 194.9 164 62.2
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 1.3e-47 194.1 166 63.3
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.7e-47 193.7 180 58.9
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 4.8e-47 192.2 167 61.7
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 4.8e-47 192.2 163 59.5
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.4e-46 190.7 167 62.3
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 4.1e-46 189.1 167 60.5
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 4.1e-46 189.1 165 61.8
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 4.1e-46 189.1 167 60.5
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 5.3e-46 188.7 169 58.0
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 3.5e-45 186.0 167 60.5
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 7.7e-45 184.9 169 59.8
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.3e-44 184.1 167 58.7
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.3e-44 184.1 167 58.7
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 2.2e-44 183.3 167 58.1
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 2.2e-44 183.3 167 58.7
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 2.2e-44 183.3 167 58.7
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 2.9e-44 183.0 142 64.1
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 2.9e-44 183.0 167 58.1
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.2e-43 179.1 133 67.7
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 1.0e-41 174.5 132 67.4
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.0e-41 172.9 165 54.5
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.6e-40 169.9 140 60.7
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 7.5e-40 168.3 129 64.3
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.4e-38 164.1 139 59.0
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 7.7e-37 158.3 175 51.4
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.2e-36 156.8 164 51.2
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 5.0e-36 155.6 164 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 8.0e-34 148.3 166 48.8
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 4.8e-31 139.0 118 56.8
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 8.5e-28 128.3 166 41.0
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 9.4e-27 124.8 166 44.0
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.7e-20 104.0 82 68.3
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 8.6e-20 101.7 81 66.7
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 2.5e-19 100.1 82 63.4
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 6.8e-17 92.0 78 57.7
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.8e-14 84.0 77 61.0
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 3.0e-12 76.6 77 50.6
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 1.0e-09 68.2 143 32.9
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 4.0e-09 66.2 185 32.4
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 5.2e-09 65.9 60 55.0
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.5e-08 64.3 44 79.5
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 4.9e-07 59.3 65 55.4
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.1e-06 56.2 62 45.2
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 7.0e-06 55.5 58 51.7


User provided reference genes

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