Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 5.2e-194 681.0 384 100.0
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 4.4e-185 651.4 390 95.6
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 9.9e-185 650.2 387 96.6
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 6.4e-184 647.5 387 96.4
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 3.4e-177 625.2 392 92.6
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 5.8e-161 571.2 390 86.4
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 8.2e-155 550.8 390 83.8
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 6.5e-152 541.2 392 81.9
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 8.7e-149 530.8 394 81.2
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 9.7e-148 527.3 393 79.6
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 2.4e-146 522.7 391 80.6
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 3.1e-146 522.3 387 80.6
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 5.3e-146 521.5 388 80.2
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 2.2e-144 516.2 390 79.7
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 2.5e-143 512.7 390 79.2
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 7.9e-142 507.7 390 79.2
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 1.0e-141 507.3 393 77.6
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 5.7e-140 501.5 386 78.0
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 7.4e-140 501.1 393 77.6
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.3e-139 500.4 386 77.2
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 3.7e-139 498.8 395 77.2
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 6.3e-139 498.0 400 75.0
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 6.3e-139 498.0 410 75.4
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 1.1e-138 497.3 395 75.9
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 4.1e-138 495.4 388 77.1
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 9.1e-138 494.2 387 76.7
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 2.0e-137 493.0 396 76.5
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 5.9e-137 491.5 388 76.3
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 1.7e-136 490.0 394 76.4
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 3.2e-135 485.7 453 67.5
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 2.1e-134 483.0 387 76.2
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 2.7e-134 482.6 390 69.5
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 4.7e-134 481.9 397 75.3
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 1.4e-133 480.3 396 73.5
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 1.8e-133 479.9 394 76.1
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 6.7e-133 478.0 398 74.9
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 8.8e-133 477.6 393 73.8
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.5e-132 476.9 386 74.9
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.5e-132 476.9 397 74.1
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 2.2e-131 473.0 390 75.1
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 1.8e-130 469.9 389 74.8
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 7.0e-130 468.0 403 71.5
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 9.1e-130 467.6 391 73.1
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.6e-129 466.8 403 71.5
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 1.6e-129 466.8 396 73.0
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 2.6e-129 466.1 395 73.7
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 4.5e-129 465.3 391 74.9
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 5.0e-128 461.8 386 72.3
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 8.5e-128 461.1 397 72.8
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 3.2e-127 459.1 392 73.5
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 5.5e-127 458.4 384 70.6
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 1.6e-126 456.8 401 72.3
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 2.7e-126 456.1 388 72.2
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 4.7e-126 455.3 387 70.0
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 2.3e-125 453.0 395 72.9
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 3.0e-125 452.6 408 70.8
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 8.8e-125 451.1 393 67.2
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 1.1e-124 450.7 387 72.4
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.5e-124 450.3 408 69.1
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 4.4e-124 448.7 397 69.8
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.3e-123 447.2 388 71.6
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 8.2e-123 444.5 393 69.5
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 2.4e-122 443.0 392 70.4
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 2.4e-122 443.0 410 66.6
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 7.0e-122 441.4 394 69.0
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 7.0e-122 441.4 410 66.3
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 4.5e-121 438.7 387 69.0
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 4.5e-121 438.7 388 72.2
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.7e-120 436.8 334 74.9
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 2.2e-120 436.4 385 71.9
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 6.5e-120 434.9 382 69.4
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 2.6e-116 422.9 447 61.3
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 5.7e-116 421.8 400 68.2
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 1.4e-114 417.2 414 59.7
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 4.5e-113 412.1 396 66.9
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 1.0e-109 401.0 403 65.3
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 3.0e-109 399.4 380 67.1
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 6.8e-109 398.3 391 67.0
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 1.2e-108 397.5 404 62.4
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 1.5e-108 397.1 402 64.4
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 3.4e-108 396.0 358 64.0
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 5.7e-108 395.2 380 66.6
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 9.8e-108 394.4 399 66.2
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 4.9e-107 392.1 450 58.9
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 5.4e-106 388.7 412 62.9
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 7.0e-106 388.3 412 63.6
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 7.0e-106 388.3 397 63.7
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 9.2e-106 387.9 386 65.8
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 9.2e-106 387.9 386 65.8
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 2.0e-105 386.7 410 62.7
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 2.0e-105 386.7 404 63.1
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 1.1e-103 380.9 306 69.3
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 1.2e-102 377.5 397 64.2
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 2.0e-100 370.2 392 63.0
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 9.2e-98 361.3 389 56.3
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 8.6e-96 354.8 430 56.5
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 1.1e-95 354.4 403 60.3
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 1.1e-95 354.4 397 60.7
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 7.3e-95 351.7 392 61.2
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 3.6e-94 349.4 394 60.9
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 8.0e-94 348.2 188 94.7
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 2.3e-93 346.7 301 75.4
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 4.0e-93 345.9 394 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 6.0e-89 332.0 427 49.4
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 3.4e-84 316.2 171 91.2
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 6.0e-81 305.4 381 55.1
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 2.5e-79 300.1 299 70.9
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 3.3e-79 299.7 471 51.0
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 7.3e-79 298.5 382 52.9
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.7e-78 295.8 218 71.1
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 1.0e-72 278.1 171 81.3
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 1.0e-72 278.1 171 81.3
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 1.0e-72 278.1 171 81.3
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 3.0e-72 276.6 298 60.1
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 2.9e-67 260.0 148 84.5
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 1.9e-66 257.3 290 63.8
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.9e-66 257.3 170 80.6
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 4.2e-66 256.1 390 43.8
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.3e-64 251.1 391 47.3
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 1.3e-62 244.6 308 52.6
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 1.4e-58 231.1 143 79.7
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 9.6e-47 191.8 411 38.2
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 1.3e-46 191.4 102 89.2
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 3.8e-43 179.9 264 48.9
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 1.4e-42 177.9 497 36.0
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.6e-41 174.5 99 82.8
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 4.3e-39 166.4 179 71.5
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 2.8e-38 163.7 174 51.1
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 3.7e-38 163.3 97 76.3
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.8e-38 162.9 97 77.3
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 3.2e-34 150.2 101 73.3
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 2.6e-23 114.0 183 42.1
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 3.4e-20 103.6 176 55.7
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 3.2e-18 97.1 109 44.0
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 4.2e-18 96.7 73 74.0
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 7.9e-17 92.4 119 53.8
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 1.8e-16 91.3 97 46.4
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 2.2e-11 74.3 123 44.7
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 6.5e-11 72.8 122 44.3
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 4.7e-09 66.6 102 37.3
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 1.0e-08 65.5 108 32.4
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 1.0e-08 65.5 103 30.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 1.0e-08 65.5 103 30.1
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 1.8e-08 64.7 132 30.3
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 1.8e-08 64.7 103 30.1
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 3.0e-08 63.9 104 33.7
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 4.0e-08 63.5 103 35.0
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 4.0e-08 63.5 103 30.1
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 5.2e-08 63.2 103 30.1
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 8.8e-08 62.4 100 35.0
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 8.8e-08 62.4 111 36.9
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 8.8e-08 62.4 102 34.3
MELO3C013338.2 Cucumis melo HOM05D002097 ORTHO05D002248 1.5e-07 61.6 106 31.1
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 1.5e-07 61.6 102 35.3
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 2.0e-07 61.2 123 32.5
MCO15G197 Micromonas commoda HOM05D002097 ORTHO05D004937 2.6e-07 60.8 101 34.7
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 7.5e-07 59.3 100 34.0
ClCG02G003960 Citrullus lanatus HOM05D002097 ORTHO05D002248 7.5e-07 59.3 106 30.2
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 9.7e-07 58.9 120 27.5
ATR0680G241 Amborella trichopoda HOM05D001563 ORTHO05D001956 1.7e-06 58.2 107 29.9
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 1.7e-06 58.2 100 31.0
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 1.7e-06 58.2 102 28.4
HPP92_001601 Vanilla planifolia HOM05D001563 ORTHO05D001956 1.7e-06 58.2 101 34.7
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 2.2e-06 57.8 100 33.0
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 2.2e-06 57.8 101 29.7
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 2.2e-06 57.8 100 35.0
Nitab4.5_0004596g0040 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.8e-06 56.6 58 58.6
Lj4A198G29 Lonicera japonica HOM05D001563 ORTHO05D001956 6.3e-06 56.2 100 32.0
CsaV3_7G001150 Cucumis sativus L. HOM05D002097 ORTHO05D002248 8.2e-06 55.8 106 29.2
Mapoly0038s0053 Marchantia polymorpha HOM05D001563 ORTHO05D001956 8.2e-06 55.8 107 30.8


User provided reference genes

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