Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.6e-181 638.6 329 100.0
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.1e-179 630.2 329 98.2
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.6e-178 628.6 329 98.2
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.4e-178 628.2 329 98.2
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-177 625.9 329 97.9
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.3e-174 615.5 329 96.0
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 5.0e-153 544.7 329 84.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.2e-151 540.0 329 84.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.8e-142 507.7 329 80.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.5e-141 506.5 328 79.6
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.6e-141 505.8 328 76.2
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 7.5e-141 504.2 329 78.1
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.7e-140 503.1 329 77.8
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.7e-140 501.9 327 77.7
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.1e-139 500.4 330 78.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.2e-139 498.8 326 77.9
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.0e-137 492.3 329 74.8
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.5e-136 490.0 329 76.0
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.5e-136 489.2 329 75.4
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 4.3e-136 488.4 347 72.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.1e-135 486.1 328 74.4
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 3.6e-135 485.3 354 71.8
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 6.2e-135 484.6 293 81.9
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.1e-134 483.8 328 73.2
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.1e-134 483.8 324 75.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.4e-134 483.4 328 73.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.8e-134 483.0 328 73.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 3.1e-134 482.3 328 72.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.6e-133 479.2 331 73.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 9.8e-133 477.2 328 73.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.8e-133 477.2 328 72.6
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.2e-132 476.1 328 72.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 4.9e-132 474.9 328 72.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 8.3e-132 474.2 331 74.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.4e-131 473.4 331 74.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.4e-131 473.4 331 72.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.4e-131 472.6 329 70.5
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.4e-131 472.6 328 71.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 9.2e-131 470.7 330 71.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.5e-130 468.8 329 69.9
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.6e-130 468.4 329 71.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.0e-129 467.2 331 72.8
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 5.0e-129 464.9 329 72.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.6e-128 461.5 329 71.7
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 9.5e-128 460.7 330 72.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.0e-126 455.3 329 71.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 8.9e-126 454.1 329 71.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.5e-125 453.4 329 70.2
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.6e-125 452.6 329 69.9
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.4e-125 452.2 329 70.2
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.4e-125 452.2 332 71.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 9.9e-125 450.7 329 70.2
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.7e-124 449.9 332 71.1
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.7e-124 448.7 324 74.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 4.9e-124 448.4 329 69.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.9e-124 448.4 401 61.8
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.9e-123 446.4 360 65.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 7.1e-123 444.5 329 69.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 9.2e-123 444.1 322 69.9
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 70.8
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.6e-122 443.4 329 69.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 69.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.5e-122 442.2 330 69.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.0e-121 440.7 329 68.7
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.0e-121 440.7 329 70.8
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.6e-121 438.0 329 68.1
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 6.6e-121 438.0 364 65.7
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 8.6e-121 437.6 329 69.9
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 7.3e-120 434.5 331 67.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.6e-119 433.3 330 68.5
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.1e-119 433.0 332 69.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.7e-119 431.8 329 68.7
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 4.7e-119 431.8 330 69.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 6.2e-119 431.4 329 68.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.4e-118 429.5 324 71.0
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.4e-118 429.5 329 68.7
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 8.9e-118 427.6 330 67.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.2e-117 427.2 329 67.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.2e-117 427.2 327 68.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.4e-117 425.6 332 67.5
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.4e-116 421.4 330 67.0
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 6.4e-116 421.4 330 66.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.4e-115 419.5 281 76.2
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.2e-115 419.1 330 64.8
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.2e-115 419.1 330 66.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 4.1e-115 418.7 329 67.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-114 416.4 330 65.8
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.7e-114 416.0 329 66.9
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.5e-114 415.6 331 65.9
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 6.0e-114 414.8 329 66.0
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 7.8e-114 414.5 331 65.9
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.7e-113 413.3 331 66.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.0e-113 412.5 330 64.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.1e-113 411.8 340 63.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.9e-112 409.8 331 65.9
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 9.6e-112 407.5 327 63.6
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.4e-110 402.9 321 66.4
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.1e-110 402.5 329 65.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 4.0e-110 402.1 273 75.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.5e-109 400.2 329 64.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.6e-109 399.4 329 64.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.2e-107 392.1 328 62.8
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.7e-105 386.7 330 62.7
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 8.7e-105 384.4 325 62.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.3e-100 370.5 328 59.8
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.8e-100 369.0 329 61.1
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 3.3e-96 355.9 329 60.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.5e-93 347.1 328 61.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 7.1e-91 338.2 327 58.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 5.1e-89 332.0 321 57.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.1e-87 326.6 176 94.3
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 6.2e-87 325.1 332 56.9
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.4e-85 319.3 326 53.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-84 317.0 331 56.2
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-84 316.6 275 61.1
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.2e-83 312.4 321 56.1
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.0e-81 307.8 324 50.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.4e-77 292.7 187 78.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.9e-76 289.7 324 50.0
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.5e-68 261.9 328 49.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.9e-67 260.4 199 67.8
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.7e-63 247.3 261 46.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.6e-58 229.6 305 42.3
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 8.8e-57 224.9 141 74.5
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.1e-56 224.6 198 60.1
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.6e-56 223.4 331 44.7
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.4e-56 222.6 215 57.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 5.7e-56 222.2 133 82.7
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-54 217.6 273 49.5
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.5e-53 213.0 158 65.8
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 8.5e-52 208.4 131 77.1
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.5e-48 197.6 131 76.3
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 9.7e-48 194.9 187 58.3
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 4.1e-46 189.5 144 63.2
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.8e-44 183.0 128 74.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 8.5e-44 181.8 276 41.7
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.0e-41 174.9 116 73.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 4.0e-41 172.9 172 51.7
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 6.8e-41 172.2 153 60.1
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.4e-40 169.5 96 81.2
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.2e-39 167.2 308 35.7
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.3e-36 157.1 139 56.1
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.9e-36 156.8 181 48.1
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-35 154.8 153 51.6
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.8e-30 137.5 145 53.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 4.1e-30 136.3 203 42.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-29 134.4 219 38.4
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 4.5e-29 132.9 82 72.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.8e-28 129.8 131 49.6
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 5.0e-28 129.4 176 42.6
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.6e-28 128.6 149 49.7
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-27 128.3 117 55.6
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 1.3e-23 114.8 68 82.4
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-22 111.7 197 40.1
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 4.6e-13 79.7 90 52.2
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 4.6e-13 79.7 90 52.2
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.3e-12 78.2 90 52.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-11 74.3 99 48.5
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 9.9e-08 62.0 124 41.1


User provided reference genes

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