Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.0e-251 870.2 445 100.0
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.5e-245 850.1 445 98.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-240 835.9 445 97.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.5e-237 825.9 445 96.0
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 4.1e-235 817.8 443 93.9
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.3e-228 796.2 445 91.2
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.2e-227 791.2 461 90.5
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-224 783.1 445 89.9
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.1e-207 725.7 452 83.2
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.3e-200 701.4 427 84.3
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.2e-199 699.1 440 84.1
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 3.3e-192 675.2 452 76.8
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 8.8e-185 650.6 454 74.0
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 2.6e-184 649.0 446 75.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.2e-183 646.0 451 72.5
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.2e-180 636.0 462 72.1
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 6.5e-180 634.4 446 72.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.5e-179 632.5 460 72.4
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 4.2e-179 631.7 449 71.9
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.4e-179 630.6 459 72.1
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.1e-178 629.4 452 71.9
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.7e-178 629.0 456 71.7
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.6e-178 628.6 456 71.7
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 5.2e-177 624.8 465 71.0
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 5.2e-177 624.8 465 71.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 5.2e-177 624.8 445 72.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 3.3e-176 622.1 453 71.7
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.7e-175 619.8 453 71.5
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 8.2e-175 617.5 453 72.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.8e-174 616.3 444 70.9
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.1e-174 615.5 455 70.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.1e-174 614.0 455 70.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.2e-173 613.6 448 72.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 4.5e-173 611.7 446 69.7
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 5.9e-173 611.3 445 71.2
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.5e-171 606.7 443 70.0
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 7.2e-171 604.4 459 68.8
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.4e-169 600.1 429 73.7
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.5e-168 596.7 450 70.2
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.5e-168 596.7 455 67.7
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.5e-168 596.7 447 69.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.0e-168 596.3 441 69.4
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 4.4e-168 595.1 440 68.4
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.7e-168 594.7 455 66.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.3e-167 593.6 445 70.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.7e-167 593.2 447 69.1
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.7e-167 593.2 444 66.4
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.3e-167 590.9 428 71.5
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 8.3e-167 590.9 436 70.4
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.2e-165 587.0 455 69.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 5.9e-165 584.7 448 67.2
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.9e-165 584.7 453 67.8
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 2.9e-164 582.4 449 68.2
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 5.0e-164 581.6 426 69.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.5e-164 581.3 443 69.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 2.7e-162 575.9 447 64.9
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.4e-161 573.5 440 66.6
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.3e-161 572.8 436 66.5
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 4.0e-161 572.0 446 66.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 9.8e-160 567.4 440 64.8
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 9.8e-160 567.4 436 66.3
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.3e-159 567.0 445 64.5
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 2.2e-159 566.2 447 67.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 4.8e-159 565.1 440 65.7
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.3e-159 564.7 444 64.9
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.1e-158 563.9 440 65.2
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.1e-158 562.4 447 66.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 5.4e-158 561.6 445 63.8
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 7.7e-157 557.8 436 65.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 5.5e-155 551.6 503 60.6
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 5.5e-155 551.6 445 65.8
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.6e-154 548.9 442 64.3
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.0e-153 545.4 445 64.0
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 6.8e-153 544.7 439 64.7
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.8e-153 544.7 436 64.7
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.3e-151 540.4 447 63.8
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.3e-151 540.4 407 69.5
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.7e-151 538.9 435 64.4
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 5.4e-150 535.0 435 64.1
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 7.8e-149 531.2 452 62.4
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.1e-147 527.3 401 69.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 4.3e-147 525.4 438 62.8
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.5e-144 516.9 535 55.5
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 3.4e-144 515.8 460 60.7
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.7e-143 513.5 424 65.6
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.1e-142 510.8 441 61.9
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 3.9e-140 502.3 462 61.5
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.1e-139 500.7 435 62.3
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.2e-136 490.7 416 64.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.6e-136 489.6 444 59.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.7e-135 486.9 450 59.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.0e-133 478.4 414 62.1
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.9e-132 475.7 429 59.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.1e-131 474.2 458 57.4
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 8.3e-127 458.0 357 65.8
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 3.5e-125 452.6 449 58.1
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.3e-124 449.9 355 66.5
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.0e-124 449.5 268 81.3
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 3.9e-124 449.1 455 55.2
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 7.3e-123 444.9 273 79.9
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.2e-119 433.3 253 82.6
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.3e-115 419.5 430 50.9
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.3e-115 419.1 405 56.5
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 7.3e-115 418.3 428 54.9
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 4.0e-113 412.5 330 66.1
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 3.4e-112 409.5 253 77.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.8e-105 387.1 428 52.3
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.2e-102 375.9 228 79.4
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 7.4e-99 365.2 419 50.1
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.5e-96 357.5 321 62.6
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 7.9e-93 345.1 322 60.2
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.1e-91 341.3 488 43.2
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 4.3e-91 339.3 283 63.6
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 3.7e-90 336.3 365 53.4
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.4e-81 307.0 323 56.3
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.4e-73 281.2 261 56.7
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 5.0e-71 272.7 278 54.7
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.8e-68 264.2 274 56.9
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 4.7e-61 239.6 247 54.7
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.8e-58 229.6 215 59.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.1e-57 226.9 412 38.8
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.1e-57 226.5 210 59.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.9e-55 220.3 440 33.9
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.1e-49 201.8 276 43.8
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 2.7e-48 197.2 255 43.1
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 4.5e-48 196.4 210 54.8
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.9e-47 193.7 136 62.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.0e-41 172.6 171 56.1
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 7.0e-41 172.6 106 80.2
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.0e-40 171.0 86 91.9
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.2e-37 161.8 98 81.6
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.6e-32 144.8 86 84.9
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.3e-31 141.7 74 87.8
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.9e-31 140.6 91 68.1
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-27 128.6 87 64.4
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 7.5e-27 125.9 273 31.5
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-20 105.5 188 41.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 9.8e-19 99.0 67 70.1
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 4.9e-18 96.7 91 56.0
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.9e-17 94.7 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.6e-15 86.3 188 36.2
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 8.6e-15 85.9 82 58.5
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 8.6e-15 85.9 61 67.2
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-12 79.0 45 80.0
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.2e-09 65.9 60 61.7
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 7.3e-06 56.2 47 55.3


User provided reference genes

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