Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 0.0e+00 1164.4 597 100.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 0.0e+00 1131.3 608 96.2
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 0.0e+00 1129.8 609 96.2
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 0.0e+00 1119.8 628 93.2
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 0.0e+00 1118.2 628 93.0
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 2.5e-299 1031.6 628 85.0
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.1e-270 934.9 629 76.8
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 9.4e-259 896.7 628 73.6
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 8.3e-255 883.6 630 71.6
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.6e-253 879.4 628 71.0
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 1.1e-246 856.7 662 67.8
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 5.4e-246 854.4 629 69.0
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 1.3e-244 849.7 629 69.6
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 3.3e-243 845.1 628 69.9
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 2.1e-242 842.4 627 69.1
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 3.6e-242 841.6 627 68.7
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 1.5e-240 836.3 629 70.1
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 7.5e-240 833.9 629 68.4
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 2.2e-239 832.4 629 67.7
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 2.9e-239 832.0 628 68.2
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 5.4e-238 827.8 628 67.7
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 2.0e-237 825.9 629 67.4
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.7e-236 822.8 628 66.7
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 5.0e-236 821.2 628 67.5
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 8.6e-236 820.5 609 69.0
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 6.2e-234 814.3 627 66.2
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 6.8e-233 810.8 630 66.2
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 2.6e-232 808.9 628 65.6
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 4.4e-232 808.1 627 65.7
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 5.8e-232 807.7 625 67.4
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 7.5e-232 807.4 627 65.2
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 1.7e-231 806.2 627 64.9
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 2.2e-231 805.8 629 66.1
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 4.9e-231 804.7 627 64.9
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 1.9e-230 802.7 609 66.3
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 2.4e-230 802.4 630 65.1
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.3e-228 796.6 627 65.7
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 3.0e-228 795.4 629 65.2
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 3.9e-228 795.0 627 64.0
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 8.6e-228 793.9 630 65.4
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 8.6e-228 793.9 627 63.6
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 2.5e-227 792.3 720 59.0
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 7.3e-227 790.8 629 65.3
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.2e-226 790.0 603 67.0
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.2e-226 790.0 632 64.7
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 4.4e-224 781.6 635 64.9
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 1.9e-222 776.2 628 63.4
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 4.1e-222 775.0 629 62.0
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 7.3e-219 764.2 628 61.3
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.5e-219 763.8 589 66.7
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.6e-218 763.1 626 62.9
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 6.2e-218 761.1 629 62.2
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 6.2e-218 761.1 596 64.9
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 8.1e-218 760.8 628 60.7
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 3.1e-217 758.8 628 60.5
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 2.2e-215 752.7 617 60.6
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 2.2e-215 752.7 627 62.5
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.8e-215 751.9 627 60.9
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 4.9e-215 751.5 627 62.4
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.9e-214 749.6 622 60.0
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 4.1e-214 748.4 628 59.6
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 4.1e-214 748.4 630 61.6
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.2e-213 746.9 628 59.6
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.6e-213 746.5 628 59.2
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 2.1e-213 746.1 629 61.2
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 2.3e-212 742.7 627 60.6
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 8.1e-210 734.2 631 62.3
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 2.4e-209 732.6 623 62.4
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 3.4e-208 728.8 630 58.4
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 2.3e-204 716.1 598 62.0
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 5.6e-203 711.4 639 60.6
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 1.2e-200 703.7 633 57.2
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 9.3e-190 667.5 494 69.4
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.0e-188 664.1 595 59.8
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.5e-187 660.2 611 58.1
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.9e-183 645.2 740 50.4
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 3.2e-182 642.5 629 57.6
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 5.1e-172 608.6 586 56.3
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.2e-167 593.2 634 53.6
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 9.4e-166 587.8 624 53.5
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.6e-165 587.0 403 72.2
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 4.5e-160 568.9 624 52.6
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 7.7e-152 541.6 626 46.8
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.3e-146 524.2 569 48.3
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.8e-145 520.4 568 47.9
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 2.4e-137 493.4 436 60.6
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 5.7e-131 472.2 597 46.9
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 3.3e-126 456.4 629 42.9
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 7.5e-123 445.3 441 54.9
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 8.3e-122 441.8 627 42.1
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.6e-115 420.2 633 39.0
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 3.2e-113 413.3 552 45.5
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.0e-111 408.3 352 60.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 6.2e-109 399.1 271 72.7
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 2.0e-107 394.0 285 67.4
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 5.8e-99 365.9 303 65.0
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 9.6e-94 348.6 290 63.4
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 5.4e-89 332.8 295 60.0
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.1e-88 330.9 328 53.4
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.0e-87 328.6 597 40.9
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 5.4e-81 306.2 244 64.8
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 2.1e-77 294.3 243 62.1
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 5.5e-65 253.1 248 53.6
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 9.7e-62 242.3 227 59.5
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.7e-58 231.5 232 54.7
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.8e-58 230.3 158 69.0
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.1e-52 212.2 177 64.4
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.9e-50 204.1 173 59.0
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.6e-48 198.4 190 57.9
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 9.7e-46 189.1 706 26.2
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.1e-44 184.1 133 68.4
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 6.1e-40 169.9 129 65.1
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 4.2e-33 147.1 596 24.7
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 3.3e-30 137.5 118 55.9
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 5.5e-25 120.2 92 63.0
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 6.3e-21 106.7 702 23.4
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.1e-20 104.4 73 60.3
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 5.5e-17 93.6 78 57.7
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.4e-15 89.0 128 43.0
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.8e-15 88.6 66 68.2
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 8.9e-15 86.3 106 50.9
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.4e-12 79.0 65 58.5
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 7.0e-12 76.6 77 51.9
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 7.0e-12 76.6 65 61.5
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.9e-09 68.6 65 49.2
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 7.3e-09 66.6 44 75.0
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 8.0e-08 63.2 65 55.4


User provided reference genes

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