Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0247 Fragaria x ananassa HOM05D001045 ORTHO05D029595 1.6e-55 219.2 111 100.0
RcHm_v2.0_Chr7g0190431 Rosa chinensis HOM05D001045 ORTHO05D004836 7.4e-32 140.6 112 71.4
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 9.6e-32 140.2 88 80.7
FvH4_5g07980 Fragaria vesca HOM05D001045 ORTHO05D004836 2.1e-31 139.0 112 70.5
FAN04G1508 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.1e-31 139.0 112 70.5
FAN08G1251 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.1e-31 139.0 112 70.5
FAN18G4157 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.1e-31 139.0 112 70.5
FAN11G2378 Fragaria x ananassa HOM05D001045 ORTHO05D029595 6.2e-31 137.5 77 92.2
EL10As4g23417 Beta vulgaris HOM05D001045 ORTHO05D004836 1.8e-30 136.0 112 68.8
AUR62025919 Chenopodium quinoa HOM05D001045 ORTHO05D004836 1.8e-30 136.0 112 68.8
AUR62029637 Chenopodium quinoa HOM05D001045 ORTHO05D004836 1.8e-30 136.0 112 68.8
MD06G1143600 Malus domestica HOM05D001045 ORTHO05D004836 4.0e-30 134.8 112 68.8
Thecc.03G126800 Theobroma cacao HOM05D001045 ORTHO05D004836 5.3e-30 134.4 111 68.5
Gohir.D03G113500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 9.0e-30 133.7 111 66.7
MD14G1158900 Malus domestica HOM05D001045 ORTHO05D004836 9.0e-30 133.7 112 67.9
Prupe.5G152800 Prunus persica HOM05D001045 ORTHO05D004836 9.0e-30 133.7 112 67.9
Nn3g16511 Nelumbo nucifera HOM05D001045 ORTHO05D004836 1.5e-29 132.9 112 67.0
Phvul.009G167400 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 1.5e-29 132.9 111 67.6
TAR629G1776 Trochodendron aralioides HOM05D001045 ORTHO05D004836 1.5e-29 132.9 112 67.0
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 1.5e-29 132.9 112 67.0
Cfa018840 Carpinus fangiana HOM05D001045 ORTHO05D004836 2.0e-29 132.5 112 67.0
Migut.I00512 Erythranthe guttata HOM05D001045 ORTHO05D004836 2.0e-29 132.5 112 67.0
Ca_24509_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 2.6e-29 132.1 111 66.7
Duzib205G1644 Durio zibethinus HOM05D001045 ORTHO05D004836 2.6e-29 132.1 110 68.2
Glyma.06G171400 Glycine max HOM05D001045 ORTHO05D004836 2.6e-29 132.1 111 66.7
VMungo1215G2889 Vigna mungo HOM05D001045 ORTHO05D004836 2.6e-29 132.1 112 67.0
Lalb_Chr11g0069641 Lupinus albus HOM05D001045 ORTHO05D004836 3.4e-29 131.7 111 66.7
Nitab4.5_0003680g0020 Nicotiana tabacum HOM05D001045 ORTHO05D004836 3.4e-29 131.7 112 66.1
Actinidia25588 Actinidia chinensis HOM05D001045 ORTHO05D004836 4.5e-29 131.3 111 66.7
Haze_07234 Corylus avellana HOM05D001045 ORTHO05D004836 4.5e-29 131.3 112 66.1
Gohir.A03G053500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 4.5e-29 131.3 111 65.8
Gorai.003G119600 Gossypium raimondii HOM05D001045 ORTHO05D004836 4.5e-29 131.3 111 65.8
Lalb_Chr23g0273561 Lupinus albus HOM05D001045 ORTHO05D004836 4.5e-29 131.3 111 66.7
MBI11_g06773_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 4.5e-29 131.3 112 67.0
Sc04g0000750 Simmondsia chinensis HOM05D001045 ORTHO05D004836 4.5e-29 131.3 112 67.0
MELO3C026230.2 Cucumis melo HOM05D001045 ORTHO05D004836 5.8e-29 131.0 112 67.0
CsaV3_1G000660 Cucumis sativus L. HOM05D001045 ORTHO05D004836 5.8e-29 131.0 112 67.0
Dinv04873 Davidia involucrata HOM05D001045 ORTHO05D004836 5.8e-29 131.0 112 67.0
Dinv11158 Davidia involucrata HOM05D001045 ORTHO05D004836 5.8e-29 131.0 112 67.0
Glyma.04G194600 Glycine max HOM05D001045 ORTHO05D004836 5.8e-29 131.0 111 65.8
Glyma.17G128500 Glycine max HOM05D001045 ORTHO05D004836 5.8e-29 131.0 111 67.6
TAR371G0766 Trochodendron aralioides HOM05D001045 ORTHO05D004836 5.8e-29 131.0 112 67.0
Ah.11g045420 Amaranthus hybridus HOM05D001045 ORTHO05D004836 7.6e-29 130.6 112 66.1
CAN.G352.26 Capsicum annuum HOM05D001045 ORTHO05D004836 7.6e-29 130.6 112 65.2
COL.COLO4_28086 Corchorus olitorius HOM05D001045 ORTHO05D004836 7.6e-29 130.6 110 66.4
Sed0018235 Sechium edule HOM05D001045 ORTHO05D004836 7.6e-29 130.6 112 67.0
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 9.9e-29 130.2 111 65.8
arahy.Tifrunner.gnm1.ann1.3PZ9PI Arachis hypogaea HOM05D001045 ORTHO05D004836 9.9e-29 130.2 111 65.8
Gohir.A07G051700 Gossypium hirsutum HOM05D001045 ORTHO05D004836 9.9e-29 130.2 109 67.9
Gorai.001G059600 Gossypium raimondii HOM05D001045 ORTHO05D004836 9.9e-29 130.2 109 67.9
arahy.Tifrunner.gnm1.ann1.B3AG7P Arachis hypogaea HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 66.7
arahy.Tifrunner.gnm1.ann1.XN7UED Arachis hypogaea HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 66.7
DCAR_016404 Daucus carota HOM05D001045 ORTHO05D004836 1.3e-28 129.8 112 66.1
Lj1g0009758 Lotus japonicus HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 64.9
MBI16_g26173_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 1.3e-28 129.8 112 66.1
Manes.14G052700 Manihot esculenta HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 66.7
Phvul.003G209600 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 66.7
Potri.012G095800 Populus trichocarpa HOM05D001045 ORTHO05D004836 1.3e-28 129.8 111 66.7
SGA_v2.0_scaffold215G42334 Striga asiatica HOM05D001045 ORTHO05D004836 1.3e-28 129.8 112 65.2
CiPaw.12G041700 Carya illinoinensis HOM05D001045 ORTHO05D004836 1.7e-28 129.4 112 66.1
Ciclev10018763m.g Citrus clementina HOM05D001045 ORTHO05D004836 1.7e-28 129.4 112 64.3
Medtr3g089020 Medicago truncatula HOM05D001045 ORTHO05D004836 1.7e-28 129.4 111 64.9
Potri.015G093600 Populus trichocarpa HOM05D001045 ORTHO05D004836 1.7e-28 129.4 112 65.2
Sabra15G0115200 Salix brachista HOM05D001045 ORTHO05D004836 1.7e-28 129.4 112 65.2
THA.LOC104798948 Tarenaya hassleriana HOM05D001045 ORTHO05D004836 2.2e-28 129.0 111 65.8
Gohir.D07G056200 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.9e-28 128.6 109 67.0
Oeu006361.1 Olea europaea HOM05D001045 ORTHO05D004836 2.9e-28 128.6 112 66.1
Peaxi162Scf00089g00522 Petunia axillaris HOM05D001045 ORTHO05D004836 2.9e-28 128.6 112 65.2
Psat5g139840 Pisum sativum HOM05D001045 ORTHO05D004836 2.9e-28 128.6 110 64.5
Solyc03g111260.3 Solanum lycopersicum HOM05D001045 ORTHO05D004836 2.9e-28 128.6 112 65.2
Sopen03g030390 Solanum pennellii HOM05D001045 ORTHO05D004836 2.9e-28 128.6 112 65.2
Aqoxy3G01499 Aquilegia oxysepala HOM05D001045 ORTHO05D004836 3.8e-28 128.3 112 65.2
Cpa.g.sc13.140 Carica papaya HOM05D001045 ORTHO05D004836 3.8e-28 128.3 111 65.8
Hund02428 Selenicereus undatus HOM05D001045 ORTHO05D004836 3.8e-28 128.3 112 64.3
Actinidia36799 Actinidia chinensis HOM05D001045 ORTHO05D004836 4.9e-28 127.9 110 65.5
FAN18G0261 Fragaria x ananassa HOM05D001045 ORTHO05D004836 4.9e-28 127.9 106 68.9
PGSC0003DMG402015244 Solanum tuberosum HOM05D001045 ORTHO05D004836 6.4e-28 127.5 112 65.2
vmacro19213 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 6.4e-28 127.5 112 65.2
ATR0680G066 Amborella trichopoda HOM05D001045 ORTHO05D004836 8.4e-28 127.1 112 64.3
Lsat_1_v5_gn_1_81241 Lactuca sativa HOM05D001045 ORTHO05D004836 8.4e-28 127.1 110 65.5
MSTRG.22907 Avicennia marina HOM05D001045 ORTHO05D004836 1.1e-27 126.7 110 64.5
Eucgr.B00129 Eucalyptus grandis HOM05D001045 ORTHO05D004836 1.4e-27 126.3 112 63.4
TPR.G26154 Trifolium pratense HOM05D001045 ORTHO05D004836 1.4e-27 126.3 111 63.1
CANSAT80G0692 Cannabis sativa HOM05D001045 ORTHO05D004836 1.9e-27 125.9 110 66.4
Cc03_g13140 Coffea canephora HOM05D001045 ORTHO05D004836 2.4e-27 125.6 112 64.3
ECA240G2390 Erigeron canadensis HOM05D001045 ORTHO05D004836 2.4e-27 125.6 110 63.6
Psat4g062560 Pisum sativum HOM05D001045 ORTHO05D004836 2.4e-27 125.6 112 63.4
Atru.chr9.1079 Acer truncatum HOM05D001045 ORTHO05D004836 3.2e-27 125.2 112 62.5
Sabra12G0070200 Salix brachista HOM05D001045 ORTHO05D004836 3.2e-27 125.2 111 64.9
Medtr4g103770 Medicago truncatula HOM05D001045 ORTHO05D004836 4.2e-27 124.8 113 61.9
CSS0020803 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D004836 5.5e-27 124.4 112 62.5
DCAR_026220 Daucus carota HOM05D001045 ORTHO05D004836 5.5e-27 124.4 112 63.4
Peaxi162Scf00536g00312 Petunia axillaris HOM05D001045 ORTHO05D004836 5.5e-27 124.4 110 64.5
QL10p004119 Quercus lobata HOM05D001045 ORTHO05D004836 5.5e-27 124.4 112 63.4
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 7.1e-27 124.0 109 63.3
AL8G40490 Arabidopsis lyrata HOM05D001045 ORTHO05D004836 9.3e-27 123.6 109 63.3
AT5G63420 Arabidopsis thaliana HOM05D001045 ORTHO05D004836 9.3e-27 123.6 109 63.3
Carub.0008s2413 Capsella rubella HOM05D001045 ORTHO05D004836 9.3e-27 123.6 109 63.3
CARHR277280 Cardamine hirsuta HOM05D001045 ORTHO05D004836 9.3e-27 123.6 109 63.3
CDE07G0382 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 9.3e-27 123.6 112 62.5
HanXRQChr03g0064991 Helianthus annuus HOM05D001045 ORTHO05D004836 9.3e-27 123.6 110 62.7
Lj9C477G11 Lonicera japonica HOM05D001045 ORTHO05D004836 9.3e-27 123.6 112 62.5
vmacro16670 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 9.3e-27 123.6 115 60.0
PSO017G5689 Papaver somniferum HOM05D001045 ORTHO05D004836 1.2e-26 123.2 112 64.3
PSO478G0896 Papaver somniferum HOM05D001045 ORTHO05D004836 1.2e-26 123.2 112 64.3
Sp2g26510 Schrenkiella parvula HOM05D001045 ORTHO05D004836 1.6e-26 122.9 109 63.3
BcaC01g02587 Brassica carinata HOM05D001045 ORTHO05D004836 2.1e-26 122.5 109 62.4
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 2.1e-26 122.5 109 62.4
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 2.1e-26 122.5 109 62.4
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 2.1e-26 122.5 109 62.4
Thhalv10003624m.g Eutrema salsugineum HOM05D001045 ORTHO05D004836 2.1e-26 122.5 109 62.4
TWI14G1089 Tripterygium wilfordii HOM05D001045 ORTHO05D004836 2.1e-26 122.5 111 63.1
unitig_27.g25101 Utricularia gibba HOM05D001045 ORTHO05D004836 2.1e-26 122.5 110 61.8
Aa31LG1G18610 Aethionema arabicum HOM05D001045 ORTHO05D004836 1.0e-25 120.2 109 62.4
Rhsim08G0188700 Rhododendron simsii HOM05D001045 ORTHO05D004836 1.0e-25 120.2 112 61.6
Ca_00917_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 1.3e-25 119.8 111 62.2
Nitab4.5_0003005g0050 Nicotiana tabacum HOM05D001045 ORTHO05D004836 2.3e-25 119.0 88 71.6
CDE04G0888 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 5.1e-25 117.9 112 61.6
Os02g0539600 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D004836 6.7e-25 117.5 123 56.1
HPP92_008938 Vanilla planifolia HOM05D001045 ORTHO05D004836 6.7e-25 117.5 110 59.1
VMungo1309G1845 Vigna mungo HOM05D001045 ORTHO05D004836 6.7e-25 117.5 72 83.3
Zm00001eb206430 Zea mays HOM05D001045 ORTHO05D004836 8.7e-25 117.1 112 58.0
Zm00001eb234620 Zea mays HOM05D001045 ORTHO05D004836 8.7e-25 117.1 112 58.0
Actinidia15837 Actinidia chinensis HOM05D001045 ORTHO05D004836 1.5e-24 116.3 74 79.7
arahy.Tifrunner.gnm1.ann1.VYC4MA Arachis hypogaea HOM05D001045 ORTHO05D004836 1.9e-24 115.9 72 81.9
ClCG06G017790 Citrullus lanatus HOM05D001045 ORTHO05D004836 2.5e-24 115.5 74 81.1
PGR083G0639 Punica granatum HOM05D001045 ORTHO05D004836 1.4e-22 109.8 141 46.8
Mapoly0037s0113 Marchantia polymorpha HOM05D001045 ORTHO05D004836 4.0e-22 108.2 110 54.5
SEGI_30926 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 3.4e-21 105.1 70 74.3
CBR_g16830 Chara braunii HOM05D001045 ORTHO05D004836 4.9e-20 101.3 107 53.3
AagrBONN_evm.TU.Sc2ySwM_369.157 Anthoceros agrestis HOM05D001045 ORTHO05D004836 8.4e-20 100.5 110 51.8
Pp3c20_9790 Physcomitrium patens HOM05D001045 ORTHO05D004836 1.4e-19 99.8 108 54.6
FvH4_3g39050 Fragaria vesca HOM05D001045 ORTHO05D029595 4.2e-19 98.2 55 90.9
SMO141G0105 Selaginella moellendorffii HOM05D001045 ORTHO05D004836 1.2e-18 96.7 110 48.2
MCO10G193 Micromonas commoda HOM05D001045 ORTHO05D004836 1.7e-12 76.3 82 52.4
Cre16.g683050 Chlamydomonas reinhardtii HOM05D001045 ORTHO05D004836 1.1e-11 73.6 58 63.8
PRCOL_00002539 Prasinoderma coloniale HOM05D001045 ORTHO05D004836 6.1e-10 67.8 96 43.8
QL10p004182 Quercus lobata HOM05D001045 ORTHO05D004836 1.0e-09 67.0 45 75.6
FvH4_5g08040 Fragaria vesca HOM05D001045 ORTHO05D004836 2.3e-09 65.9 63 58.7


User provided reference genes

Program Settings