Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.5e-261 903.3 446 100.0
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-251 872.1 437 98.9
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.0e-201 705.3 449 83.5
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 1.5e-197 693.0 445 83.1
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-158 563.1 464 68.5
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-158 563.1 464 68.3
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-158 561.6 464 68.1
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 2.3e-153 546.2 464 66.4
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.0e-132 476.1 484 60.7
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 7.3e-131 471.5 465 58.5
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 9.5e-131 471.1 464 58.0
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 1.4e-129 467.2 464 59.7
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 1.4e-129 467.2 466 58.8
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 5.8e-128 461.8 464 56.9
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 7.6e-128 461.5 465 55.9
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.4e-127 458.0 366 69.4
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 3.2e-126 456.1 467 56.1
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 1.1e-123 447.6 465 54.4
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 3.3e-123 446.0 465 55.1
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 4.3e-123 445.7 466 56.7
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 5.6e-123 445.3 465 55.9
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.3e-122 444.1 465 54.2
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-122 443.7 379 67.0
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 2.1e-122 443.4 465 54.6
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.1e-121 441.0 465 55.1
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.1e-121 441.0 459 54.7
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.8e-121 440.3 472 54.4
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 1.2e-120 437.6 465 53.1
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 2.0e-120 436.8 465 53.8
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 3.4e-120 436.0 472 54.0
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 2.2e-119 433.3 465 53.1
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 8.4e-119 431.4 465 52.9
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 8.4e-119 431.4 465 54.0
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.4e-118 430.6 466 53.4
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 1.9e-118 430.3 465 53.1
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.4e-118 429.9 465 54.0
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.4e-118 429.9 465 54.0
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 4.2e-118 429.1 466 53.4
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 7.1e-118 428.3 499 51.1
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 9.3e-118 427.9 466 53.6
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 1.6e-117 427.2 465 53.1
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 2.1e-117 426.8 467 51.8
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.1e-117 426.8 465 53.5
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 3.5e-117 426.0 465 54.6
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 4.6e-117 425.6 465 53.5
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 6.0e-117 425.2 467 53.7
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 7.8e-117 424.9 465 54.2
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 1.7e-116 423.7 465 51.8
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 3.0e-116 422.9 465 52.7
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 5.1e-116 422.2 465 53.1
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 5.1e-116 422.2 472 53.4
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 5.1e-116 422.2 469 52.9
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.9e-115 420.2 465 52.0
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 3.3e-115 419.5 465 52.0
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 4.3e-115 419.1 465 52.5
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 7.3e-115 418.3 467 52.5
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 1.3e-114 417.5 465 52.0
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 1.3e-114 417.5 466 51.7
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 1.6e-114 417.2 465 52.7
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-114 416.4 472 54.9
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 6.2e-114 415.2 467 53.3
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 3.1e-113 412.9 465 53.1
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 6.9e-113 411.8 473 52.4
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.5e-112 410.6 468 50.9
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.5e-112 410.6 467 51.0
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 2.0e-112 410.2 465 50.8
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.6e-112 409.8 465 52.5
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 5.8e-112 408.7 472 50.8
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 7.6e-112 408.3 465 51.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 9.9e-112 407.9 466 50.2
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.3e-111 407.5 466 51.3
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 2.2e-111 406.8 466 51.3
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.9e-111 406.4 466 50.4
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 4.9e-111 405.6 467 49.0
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.4e-111 405.2 467 53.7
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.9e-110 403.7 465 49.9
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 5.4e-110 402.1 465 49.7
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 5.4e-110 402.1 440 55.0
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 9.3e-110 401.4 471 54.1
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.2e-109 401.0 368 57.9
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 4.6e-109 399.1 464 50.2
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 6.0e-109 398.7 466 50.6
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.1e-108 395.6 465 49.0
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.1e-107 394.4 471 49.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 1.6e-106 390.6 471 49.0
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 4.0e-105 386.0 467 49.9
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.3e-105 385.6 478 49.0
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 3.4e-104 382.9 465 49.5
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.8e-103 379.4 534 44.6
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 4.9e-103 379.0 465 49.5
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.1e-102 377.9 438 52.3
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 7.1e-102 375.2 465 48.8
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.1e-101 373.6 465 48.8
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 3.0e-100 369.8 473 46.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 5.1e-100 369.0 473 46.9
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 3.3e-99 366.3 467 46.9
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 9.6e-99 364.8 432 50.2
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.6e-98 364.0 473 46.7
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 2.8e-98 363.2 467 46.7
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-96 357.5 475 49.7
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.9e-95 352.4 466 47.4
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 3.2e-94 349.7 466 46.1
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 4.2e-94 349.4 435 49.9
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.5e-94 349.0 471 49.9
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 7.1e-94 348.6 493 45.4
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 4.6e-93 345.9 465 47.1
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 7.9e-93 345.1 466 44.8
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 2.5e-91 340.1 433 46.9
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 4.3e-91 339.3 465 44.7
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.1e-89 334.7 467 48.6
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 3.1e-89 333.2 450 45.3
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 2.5e-86 323.6 214 72.4
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 3.2e-86 323.2 431 46.4
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 2.2e-82 310.5 323 53.6
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 6.3e-82 308.9 469 44.6
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 5.3e-73 279.3 466 42.1
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 5.0e-71 272.7 336 53.6
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 3.3e-67 260.0 476 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 2.2e-66 257.3 216 58.8
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 2.9e-63 246.9 472 39.2
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 2.5e-62 243.8 395 41.8
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 5.7e-59 232.6 464 35.6
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 3.6e-53 213.4 479 37.0
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 6.1e-53 212.6 517 33.7
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.0e-52 209.9 467 37.5
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.4e-51 206.5 99 99.0
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 7.5e-51 205.7 466 34.5
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.3e-50 204.9 431 34.3
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.1e-49 201.8 175 54.9
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 3.5e-48 196.8 465 35.3
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.6e-45 186.8 450 33.3
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 1.4e-44 184.9 468 35.7
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 5.2e-44 183.0 474 34.4
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 2.6e-43 180.6 461 32.8
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 5.4e-41 172.9 481 31.4
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-40 171.0 410 34.6
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 4.6e-40 169.9 349 36.4
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 6.4e-34 149.4 470 28.9
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.5e-32 143.7 469 30.1
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.5e-32 143.7 469 30.1
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 7.8e-32 142.5 200 46.5
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 5.0e-31 139.8 513 25.9
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 5.0e-31 139.8 166 48.2
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 4.3e-30 136.7 184 48.9
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.6e-30 136.3 493 29.2
FAN06G2420 Fragaria x ananassa HOM05D003934 ORTHO05D202628 8.1e-29 132.5 66 92.4
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.2e-27 128.6 169 48.5
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.8e-27 126.3 210 41.4
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 6.4e-26 122.9 137 53.3
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.4e-26 122.9 311 33.4
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 2.7e-24 117.5 72 81.9
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.3e-23 114.4 90 56.7
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.1e-22 112.1 142 47.9
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.5e-22 111.7 178 43.3
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.8e-20 104.8 93 53.8
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.8e-20 104.8 93 53.8
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 8.4e-18 95.9 70 68.6
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 2.1e-13 81.3 72 54.2
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 2.1e-13 81.3 72 54.2
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.4e-12 77.8 59 61.0
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 3.1e-12 77.4 46 71.7
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.3e-10 72.0 55 67.3
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.4e-09 67.8 69 46.4
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.2e-09 67.0 81 44.4
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.2e-09 67.0 37 83.8
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.3e-06 57.4 124 33.1


User provided reference genes

Program Settings