Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.7e-182 644.0 933 100.0
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 2.6e-170 603.6 933 97.0
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.6e-170 603.6 933 90.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.0e-166 591.7 934 96.9
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.4e-128 464.2 888 93.8
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.3e-108 398.7 362 64.4
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 5.9e-106 389.8 366 64.5
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.3e-94 351.3 302 60.9
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 3.0e-94 350.9 317 63.1
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.8e-89 334.0 309 62.5
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 8.5e-89 332.8 296 62.2
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 5.5e-88 330.1 326 60.7
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 5.2e-86 323.6 298 64.4
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 5.2e-86 323.6 303 60.7
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 6.7e-86 323.2 307 59.6
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 3.3e-85 320.9 301 59.5
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 7.4e-85 319.7 320 56.9
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 9.7e-85 319.3 293 62.1
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 9.7e-85 319.3 284 70.1
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 3.7e-84 317.4 296 65.9
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 6.3e-84 316.6 324 56.2
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 8.2e-84 316.2 345 56.5
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 8.2e-84 316.2 301 58.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.2e-82 312.4 299 64.9
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.2e-82 312.4 322 56.5
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.2e-82 312.4 335 54.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.6e-82 311.2 260 69.6
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.6e-82 311.2 319 58.6
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 3.5e-82 310.8 299 62.2
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 7.7e-82 309.7 328 57.0
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.0e-81 309.3 320 57.8
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.3e-81 308.9 305 59.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.3e-81 308.9 306 57.2
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.2e-81 308.1 263 60.8
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 5.0e-81 307.0 321 58.3
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.1e-80 305.8 302 56.0
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.1e-80 305.8 278 60.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.5e-80 305.4 322 59.3
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.9e-80 305.1 324 58.3
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 5.5e-80 303.5 240 68.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.2e-80 303.1 193 74.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 7.2e-80 303.1 273 60.4
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.6e-79 302.0 290 59.0
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 4.7e-79 300.4 272 64.0
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.7e-79 300.4 324 55.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.1e-79 300.1 264 63.6
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.4e-78 298.9 312 56.4
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.3e-78 298.1 302 56.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.3e-78 298.1 312 56.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 3.0e-78 297.7 290 64.5
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 4.0e-78 297.4 291 63.9
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 5.2e-78 297.0 322 55.3
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 8.8e-78 296.2 294 58.2
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.6e-77 294.7 260 64.6
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.6e-77 294.7 260 64.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.6e-77 294.7 327 56.0
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 3.3e-77 294.3 294 55.4
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 3.3e-77 294.3 301 56.5
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 7.5e-77 293.1 327 52.0
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.3e-76 292.4 283 57.2
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 3.7e-76 290.8 305 55.4
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 4.8e-76 290.4 323 57.3
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 8.2e-76 289.7 280 55.4
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 1.4e-75 288.9 290 62.4
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.8e-75 288.5 262 61.5
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.1e-75 287.7 301 55.1
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 4.1e-75 287.3 299 57.2
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 7.0e-75 286.6 326 54.3
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 2.7e-74 284.6 326 52.8
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.7e-74 284.6 246 60.2
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 2.7e-74 284.6 277 61.4
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 3.5e-74 284.3 302 56.3
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 4.5e-74 283.9 302 55.3
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.0e-73 282.7 287 61.0
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.3e-73 282.3 323 55.4
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.7e-73 282.0 313 50.5
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 6.5e-73 280.0 330 51.8
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.5e-72 278.1 203 65.5
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 7.2e-72 276.6 313 56.2
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 9.4e-72 276.2 301 52.8
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 8.0e-71 273.1 323 53.3
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 8.0e-71 273.1 301 55.5
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 8.8e-70 269.6 312 56.1
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.0e-69 268.5 314 54.8
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.4e-69 267.7 311 54.7
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.8e-67 261.9 282 56.7
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 4.5e-66 257.3 313 55.0
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-64 252.7 268 56.7
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.5e-64 252.3 310 46.1
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.5e-64 252.3 282 54.6
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 2.0e-61 241.9 226 64.2
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 2.6e-61 241.5 295 50.5
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.7e-60 238.8 243 57.6
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.4e-59 233.8 350 50.9
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 8.0e-55 219.9 147 74.8
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 4.0e-54 217.6 192 57.8
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 3.4e-53 214.5 149 70.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.5e-53 213.4 170 60.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 9.2e-51 206.5 156 66.0
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 1.4e-46 192.6 131 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.4e-43 182.6 190 45.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.6e-42 179.1 194 54.6
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.3e-41 175.3 186 44.1
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.5e-40 171.8 188 46.8
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 4.0e-38 164.5 132 62.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 3.7e-36 157.9 95 80.0
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 4.6e-34 151.0 187 43.3
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.7e-33 149.1 187 43.3
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.5e-32 146.0 107 70.1
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 3.3e-32 144.8 123 63.4
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.3e-32 144.4 113 67.3
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.6e-31 141.4 83 80.7
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 4.7e-31 141.0 195 39.5
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 4.7e-31 141.0 117 60.7
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.2e-31 140.6 79 82.3
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.1e-30 139.8 104 70.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.4e-30 139.4 203 42.4
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.8e-30 137.1 98 68.4
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 6.8e-30 137.1 116 64.7
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 8.9e-30 136.7 115 63.5
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.2e-29 136.3 191 36.1
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 6.4e-28 130.6 90 71.1
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.4e-27 127.5 105 60.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 8.6e-25 120.2 105 61.0
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-24 119.0 87 64.4
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.3e-24 118.2 123 53.7
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.6e-24 117.5 76 63.2
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.1e-22 111.7 78 65.4
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 7.6e-21 107.1 72 72.2
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 7.8e-18 97.1 204 35.8
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 4.0e-14 84.7 43 93.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 9.9e-13 80.1 64 62.5
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.7e-12 79.3 73 54.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.2e-12 79.0 151 29.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-11 75.9 74 56.8
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.0e-09 70.1 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 2.4e-06 58.9 84 38.1
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 2.4e-06 58.9 84 36.9
Aa31LG2G10220 Aethionema arabicum HOM05D000142 ORTHO05D008707 3.1e-06 58.5 103 35.0
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.1e-06 58.5 121 33.1
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.0e-06 58.2 84 38.1
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 4.0e-06 58.2 83 36.1
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 4.0e-06 58.2 90 35.6
Actinidia03608 Actinidia chinensis HOM05D000285 ORTHO05D000241 6.9e-06 57.4 90 36.7
Ah.02g115740 Amaranthus hybridus HOM05D000142 ORTHO05D007638 6.9e-06 57.4 89 39.3
Potri.006G202000 Populus trichocarpa HOM05D000142 ORTHO05D007638 6.9e-06 57.4 94 35.1
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 6.9e-06 57.4 84 39.3
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 9.0e-06 57.0 140 30.0
Duzib093G2001 Durio zibethinus HOM05D000142 ORTHO05D007638 9.0e-06 57.0 90 35.6
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 9.0e-06 57.0 95 36.8


User provided reference genes

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