Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0164 Fragaria x ananassa HOM05D000280 ORTHO05D006100 2.0e-98 362.5 188 100.0
RcHm_v2.0_Chr6g0302681 Rosa chinensis HOM05D000280 ORTHO05D006100 2.6e-82 308.9 173 91.3
FvH4_2g38640 Fragaria vesca HOM05D000280 ORTHO05D006100 3.8e-81 305.1 180 88.9
FAN15G1052 Fragaria x ananassa HOM05D000280 ORTHO05D006100 5.0e-81 304.7 180 88.9
FAN20G1379 Fragaria x ananassa HOM05D000280 ORTHO05D006100 1.6e-79 299.7 180 87.8
FvH4_5g19710 Fragaria vesca HOM05D000280 ORTHO05D006100 7.7e-74 280.8 188 81.4
Ciclev10007529m.g Citrus clementina HOM05D000280 ORTHO05D006100 2.6e-61 239.2 194 65.5
Duzib168G0370 Durio zibethinus HOM05D000280 ORTHO05D006100 1.7e-60 236.5 174 69.5
Prupe.1G461200 Prunus persica HOM05D000280 ORTHO05D006100 2.2e-60 236.1 174 73.0
VMungo0251G0391 Vigna mungo HOM05D000280 ORTHO05D006100 1.1e-59 233.8 190 67.9
Phvul.002G243900 Phaseolus vulgaris HOM05D000280 ORTHO05D006100 1.4e-59 233.4 190 67.4
Eucgr.C04004 Eucalyptus grandis HOM05D000280 ORTHO05D006100 3.1e-59 232.3 174 69.0
MD08G1131300 Malus domestica HOM05D000280 ORTHO05D006100 4.1e-59 231.9 174 71.3
Manes.03G003000 Manihot esculenta HOM05D000280 ORTHO05D006100 5.4e-59 231.5 181 70.2
CANSAT11G2600 Cannabis sativa HOM05D000280 ORTHO05D006100 9.2e-59 230.7 174 71.3
Ca_17873_v3 Cicer arietinum L. HOM05D000280 ORTHO05D006100 9.2e-59 230.7 190 65.3
Gohir.A05G065100 Gossypium hirsutum HOM05D000280 ORTHO05D006100 9.2e-59 230.7 173 67.1
Gohir.A06G106400 Gossypium hirsutum HOM05D000280 ORTHO05D006100 9.2e-59 230.7 173 68.2
Gohir.D05G067700 Gossypium hirsutum HOM05D000280 ORTHO05D006100 1.6e-58 229.9 173 67.1
Gorai.009G068500 Gossypium raimondii HOM05D000280 ORTHO05D006100 1.6e-58 229.9 173 66.5
MD15G1109000 Malus domestica HOM05D000280 ORTHO05D006100 2.7e-58 229.2 174 71.3
Gohir.D06G108600 Gossypium hirsutum HOM05D000280 ORTHO05D006100 4.5e-58 228.4 173 68.2
RcHm_v2.0_Chr6g0304851 Rosa chinensis HOM05D000280 ORTHO05D006100 4.5e-58 228.4 174 72.4
TPR.G6781 Trifolium pratense HOM05D000280 ORTHO05D006100 4.5e-58 228.4 190 64.2
BcaC03g13321 Brassica carinata HOM05D000280 ORTHO05D006100 5.9e-58 228.0 194 62.9
BolC2t06416H Brassica oleracea HOM05D000280 ORTHO05D006100 5.9e-58 228.0 194 62.9
FAN27G1445 Fragaria x ananassa HOM05D000280 ORTHO05D006100 5.9e-58 228.0 167 76.0
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 7.8e-58 227.6 174 68.4
Gorai.010G123300 Gossypium raimondii HOM05D000280 ORTHO05D006100 7.8e-58 227.6 173 67.6
Thecc.09G006100 Theobroma cacao HOM05D000280 ORTHO05D006100 7.8e-58 227.6 174 67.8
arahy.Tifrunner.gnm1.ann1.SPY8PK Arachis hypogaea HOM05D000280 ORTHO05D006100 1.0e-57 227.3 195 62.6
arahy.Tifrunner.gnm1.ann1.Z3E7QY Arachis hypogaea HOM05D000280 ORTHO05D006100 1.0e-57 227.3 195 62.6
Lj4A878G36 Lonicera japonica HOM05D000280 ORTHO05D006100 1.3e-57 226.9 195 63.1
A02p00570 Brassica napus HOM05D000280 ORTHO05D006100 1.7e-57 226.5 194 61.9
C03p05380 Brassica napus HOM05D000280 ORTHO05D006100 1.7e-57 226.5 195 63.1
BraA02t05040Z Brassica rapa HOM05D000280 ORTHO05D006100 1.7e-57 226.5 194 61.9
TWI32G0853 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 1.7e-57 226.5 174 68.4
Hma1.2p1_0751F.1_g212700 Hydrangea macrophylla HOM05D000280 ORTHO05D006100 2.3e-57 226.1 174 68.4
Rhsim07G0169700 Rhododendron simsii HOM05D000280 ORTHO05D006100 2.9e-57 225.7 174 70.1
Lalb_Chr12g0204821 Lupinus albus HOM05D000280 ORTHO05D006100 5.0e-57 224.9 190 64.2
Medtr8g087950 Medicago truncatula HOM05D000280 ORTHO05D006100 5.0e-57 224.9 190 63.2
BcaB01g06268 Brassica carinata HOM05D000280 ORTHO05D006100 6.6e-57 224.6 195 61.5
BraA03t09807Z Brassica rapa HOM05D000280 ORTHO05D006100 6.6e-57 224.6 195 61.5
CiPaw.08G018800 Carya illinoinensis HOM05D000280 ORTHO05D006100 6.6e-57 224.6 173 67.6
A03p04670 Brassica napus HOM05D000280 ORTHO05D006100 8.6e-57 224.2 195 61.5
Cpa.g.sc23.2 Carica papaya HOM05D000280 ORTHO05D006100 8.6e-57 224.2 174 68.4
Glyma.08G121100 Glycine max HOM05D000280 ORTHO05D006100 8.6e-57 224.2 190 65.3
Lj4g0007463 Lotus japonicus HOM05D000280 ORTHO05D006100 8.6e-57 224.2 190 65.3
Dinv17597 Davidia involucrata HOM05D000280 ORTHO05D006100 1.1e-56 223.8 195 63.6
Thhalv10012906m.g Eutrema salsugineum HOM05D000280 ORTHO05D006100 1.1e-56 223.8 195 61.5
Actinidia14148 Actinidia chinensis HOM05D000280 ORTHO05D006100 1.5e-56 223.4 174 69.0
BcaB05g21493 Brassica carinata HOM05D000280 ORTHO05D006100 1.5e-56 223.4 195 61.5
C02p04560 Brassica napus HOM05D000280 ORTHO05D006100 1.5e-56 223.4 194 61.3
Potri.006G275500 Populus trichocarpa HOM05D000280 ORTHO05D006100 1.5e-56 223.4 175 66.9
TAR622G1315 Trochodendron aralioides HOM05D000280 ORTHO05D006100 1.5e-56 223.4 195 63.6
QL12p024915 Quercus lobata HOM05D000280 ORTHO05D006100 1.9e-56 223.0 174 69.0
Sp6g32810 Schrenkiella parvula HOM05D000280 ORTHO05D006100 2.5e-56 222.6 194 60.8
Glyma.05G163800 Glycine max HOM05D000280 ORTHO05D006100 4.3e-56 221.9 190 64.2
HanXRQChr12g0371811 Helianthus annuus HOM05D000280 ORTHO05D006100 4.3e-56 221.9 195 63.6
vmacro05110 Vaccinium macrocarpon HOM05D000280 ORTHO05D006100 4.3e-56 221.9 175 68.6
BolC3t13051H Brassica oleracea HOM05D000280 ORTHO05D006100 5.6e-56 221.5 195 61.0
FAN27G1572 Fragaria x ananassa HOM05D000280 ORTHO05D008407 5.6e-56 221.5 174 69.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 7.3e-56 221.1 174 67.2
CiPaw.07G213900 Carya illinoinensis HOM05D000280 ORTHO05D006100 9.5e-56 220.7 174 66.7
FvH4_2g36930 Fragaria vesca HOM05D000280 ORTHO05D006100 9.5e-56 220.7 174 69.0
AT5G10630 Arabidopsis thaliana HOM05D000280 ORTHO05D006100 2.1e-55 219.5 195 60.5
Lsat_1_v5_gn_8_154301 Lactuca sativa HOM05D000280 ORTHO05D006100 2.1e-55 219.5 195 61.5
CAN.G1425.23 Capsicum annuum HOM05D000280 ORTHO05D006100 2.8e-55 219.2 195 61.5
Migut.D02069 Erythranthe guttata HOM05D000280 ORTHO05D006100 2.8e-55 219.2 195 59.5
FAN15G1693 Fragaria x ananassa HOM05D000280 ORTHO05D008407 2.8e-55 219.2 174 68.4
Carub.0006s0912 Capsella rubella HOM05D000280 ORTHO05D006100 6.1e-55 218.0 195 59.0
Atru.chr7.2629 Acer truncatum HOM05D000280 ORTHO05D006100 1.0e-54 217.2 173 68.2
GSVIVG01015660001 Vitis vinifera HOM05D000280 ORTHO05D006100 1.4e-54 216.9 190 65.3
FAN20G0398 Fragaria x ananassa HOM05D000280 ORTHO05D008407 1.8e-54 216.5 174 67.8
THA.LOC104814967 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 1.8e-54 216.5 195 59.0
PGR044G0314 Punica granatum HOM05D000280 ORTHO05D006100 4.0e-54 215.3 190 60.0
Cc04_g07010 Coffea canephora HOM05D000280 ORTHO05D006100 6.8e-54 214.5 174 63.8
Haze_21719 Corylus avellana HOM05D000280 ORTHO05D006100 6.8e-54 214.5 180 65.0
Aqoxy6G02767 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 1.2e-53 213.8 174 67.8
Nn7g38182 Nelumbo nucifera HOM05D000280 ORTHO05D006100 1.2e-53 213.8 195 61.0
CARHR202670 Cardamine hirsuta HOM05D000280 ORTHO05D006100 1.5e-53 213.4 195 59.0
Oeu017963.1 Olea europaea HOM05D000280 ORTHO05D006100 1.5e-53 213.4 195 61.0
Oeu052532.1 Olea europaea HOM05D000280 ORTHO05D006100 1.5e-53 213.4 195 62.1
Peaxi162Scf00634g00037 Petunia axillaris HOM05D000280 ORTHO05D006100 1.5e-53 213.4 195 60.0
Psat7g066640 Pisum sativum HOM05D000280 ORTHO05D006100 1.5e-53 213.4 228 54.4
Peaxi162Scf00683g00036 Petunia axillaris HOM05D000280 ORTHO05D006100 2.0e-53 213.0 195 59.0
CsaV3_3G046990 Cucumis sativus L. HOM05D000280 ORTHO05D006100 2.6e-53 212.6 174 64.4
ClCG05G017490 Citrullus lanatus HOM05D000280 ORTHO05D006100 3.4e-53 212.2 174 64.9
Aqoxy7G02538 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 5.7e-53 211.5 174 67.2
Nitab4.5_0001536g0070 Nicotiana tabacum HOM05D000280 ORTHO05D006100 7.5e-53 211.1 195 59.5
Sopen12g016940 Solanum pennellii HOM05D000280 ORTHO05D006100 7.5e-53 211.1 195 59.0
AUR62009047 Chenopodium quinoa HOM05D000280 ORTHO05D006100 9.8e-53 210.7 195 57.4
ECA233G5364 Erigeron canadensis HOM05D000280 ORTHO05D006100 9.8e-53 210.7 195 61.0
Sc23g0005160 Simmondsia chinensis HOM05D000280 ORTHO05D006100 9.8e-53 210.7 173 65.9
Nitab4.5_0023239g0010 Nicotiana tabacum HOM05D000280 ORTHO05D006100 1.3e-52 210.3 195 58.5
MBI06_g17218_MAGBIO Magnolia biondii HOM05D000280 ORTHO05D006100 1.7e-52 209.9 195 59.0
MELO3C003637.2 Cucumis melo HOM05D000280 ORTHO05D006100 2.2e-52 209.5 174 63.8
SalBow8G3273 Salvia bowleyana HOM05D000280 ORTHO05D006100 2.2e-52 209.5 173 62.4
THA.LOC104803321 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 4.9e-52 208.4 195 58.5
Sed0016088 Sechium edule HOM05D000280 ORTHO05D006100 1.1e-51 207.2 174 63.2
MSTRG.4317 Avicennia marina HOM05D000280 ORTHO05D006100 1.4e-51 206.8 195 59.0
EL10Ac2g03735 Beta vulgaris HOM05D000280 ORTHO05D006100 2.4e-51 206.1 195 57.9
Solyc03g119290.3 Solanum lycopersicum HOM05D000280 ORTHO05D006100 4.1e-51 205.3 195 56.9
Aa31LG3G16360 Aethionema arabicum HOM05D000280 ORTHO05D006100 9.2e-51 204.1 195 57.4
TWI34G1405 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 9.2e-51 204.1 175 61.7
Sopen03g038170 Solanum pennellii HOM05D000280 ORTHO05D006100 1.2e-50 203.8 195 57.4
DCAR_002123 Daucus carota HOM05D000280 ORTHO05D006100 1.6e-50 203.4 174 63.2
PSO732G0431 Papaver somniferum HOM05D000280 ORTHO05D006100 2.0e-50 203.0 195 56.4
COL.COLO4_19045 Corchorus olitorius HOM05D000280 ORTHO05D006100 3.5e-50 202.2 174 62.6
Sed0003669 Sechium edule HOM05D000280 ORTHO05D006100 4.6e-50 201.8 174 64.4
AUR62020615 Chenopodium quinoa HOM05D000280 ORTHO05D006100 5.9e-50 201.4 202 55.0
PSO675G6860 Papaver somniferum HOM05D000280 ORTHO05D006100 5.9e-50 201.4 195 55.9
Hund19401 Selenicereus undatus HOM05D000280 ORTHO05D006100 1.3e-49 200.3 196 58.7
CSS0007869 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D006100 3.0e-49 199.1 174 64.9
Sabra06G0213300 Salix brachista HOM05D000280 ORTHO05D008407 6.6e-49 198.0 208 54.8
ATR0665G368 Amborella trichopoda HOM05D000280 ORTHO05D006100 4.3e-48 195.3 175 60.6
Solyc12g036410.3 Solanum lycopersicum HOM05D000280 ORTHO05D006100 7.3e-48 194.5 161 64.0
unitig_21.g20433 Utricularia gibba HOM05D000280 ORTHO05D006100 7.3e-48 194.5 195 55.4
Nitab4.5_0000208g0390 Nicotiana tabacum HOM05D000280 ORTHO05D006100 9.5e-48 194.1 214 53.7
Nitab4.5_0002906g0130 Nicotiana tabacum HOM05D000548 ORTHO05D001552 1.2e-45 187.2 159 62.3
Zm00001eb430090 Zea mays HOM05D000280 ORTHO05D006100 9.8e-45 184.1 190 56.8
Ah.11g043740 Amaranthus hybridus HOM05D000280 ORTHO05D006100 1.3e-44 183.7 226 48.2
CDE03G0365 Ceratophyllum demersum HOM05D000280 ORTHO05D006100 2.2e-44 183.0 195 51.8
Os01g0116600 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 1.1e-43 180.6 174 57.5
HPP92_020873 Vanilla planifolia HOM05D000280 ORTHO05D006100 1.1e-43 180.6 174 55.7
BcaB01g05511 Brassica carinata HOM05D000280 ORTHO05D006100 1.4e-43 180.3 198 55.1
HPP92_028114 Vanilla planifolia HOM05D000280 ORTHO05D006100 1.9e-43 179.9 174 55.7
SGA_v2.0_scaffold74G24572 Striga asiatica HOM05D000280 ORTHO05D006100 2.0e-42 176.4 175 54.3
Actinidia03575 Actinidia chinensis HOM05D000280 ORTHO05D006100 6.0e-42 174.9 143 65.0
Zm00001eb066140 Zea mays HOM05D000280 ORTHO05D006100 7.3e-40 167.9 174 51.1
PGSC0003DMG400005728 Solanum tuberosum HOM05D000280 ORTHO05D006100 2.8e-39 166.0 161 57.8
Os04g0677800 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 3.6e-39 165.6 174 51.7
BcaB01g06266 Brassica carinata HOM05D000280 ORTHO05D006100 2.0e-37 159.8 212 47.6
SEGI_34072 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 8.3e-36 154.5 174 47.1
SEGI_04248 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 1.4e-35 153.7 174 47.1
Psat0s3170g0120 Pisum sativum HOM05D000280 ORTHO05D028299 5.4e-35 151.8 128 62.5
SMO351G0182 Selaginella moellendorffii HOM05D000280 ORTHO05D006100 3.6e-31 139.0 173 44.5
Mapoly0066s0056 Marchantia polymorpha HOM05D000280 ORTHO05D006100 4.0e-30 135.6 172 41.9
Pp3c5_28870 Physcomitrium patens HOM05D000280 ORTHO05D006100 1.3e-28 130.6 174 43.1
AagrBONN_evm.TU.Sc2ySwM_369.168 Anthoceros agrestis HOM05D000280 ORTHO05D006100 1.4e-27 127.1 197 40.1
BcaB01g05514 Brassica carinata HOM05D000280 ORTHO05D006100 1.9e-27 126.7 213 42.7
CBR_g11026 Chara braunii HOM05D000280 ORTHO05D006100 1.9e-27 126.7 174 38.5
HPP92_004269 Vanilla planifolia HOM05D000280 ORTHO05D006100 4.1e-27 125.6 149 48.3
BolC3t13039H Brassica oleracea HOM05D000249 ORTHO05D000206 6.6e-17 91.7 144 42.4
C03p05220 Brassica napus HOM05D000280 ORTHO05D000206 7.6e-13 78.2 129 40.3
SEGI_06036 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 1.7e-12 77.0 98 45.9
Hma1.2p1_0195F.1_g084670 Hydrangea macrophylla HOM05D000280 ORTHO05D028299 2.9e-12 76.3 67 61.2
FAN13G3203 Fragaria x ananassa HOM05D000280 ORTHO05D006100 8.7e-09 64.7 33 90.9
SMO239G0009 Selaginella moellendorffii HOM05D000280 ORTHO05D004091 3.7e-07 59.3 171 28.1
Manes.14G168200 Manihot esculenta HOM05D000280 ORTHO05D004091 6.2e-07 58.5 173 30.1
PGR083G2432 Punica granatum HOM05D000280 ORTHO05D004091 1.4e-06 57.4 173 28.9
Manes.06G008800 Manihot esculenta HOM05D000280 ORTHO05D004091 3.1e-06 56.2 173 29.5
CBR_g45513 Chara braunii HOM05D000280 ORTHO05D004091 4.0e-06 55.8 170 28.8
Cfa001629 Carpinus fangiana HOM05D000280 ORTHO05D121981 6.9e-06 55.1 161 28.6
BcaC05g25700 Brassica carinata HOM05D000280 ORTHO05D004091 9.0e-06 54.7 173 28.3
C05p16390 Brassica napus HOM05D000280 ORTHO05D004091 9.0e-06 54.7 173 28.3
BolC5t30336H Brassica oleracea HOM05D000280 ORTHO05D004091 9.0e-06 54.7 173 28.3


User provided reference genes

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