Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.9e-182 643.3 933 100.0
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 9.5e-173 611.7 933 96.9
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.0e-172 608.6 933 89.9
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.9e-166 589.7 934 96.9
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 5.1e-126 456.4 947 88.9
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 2.6e-106 391.0 363 62.8
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 5.0e-105 386.7 366 65.6
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 7.4e-93 346.3 315 61.6
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 8.2e-92 342.8 303 59.7
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 5.0e-89 333.6 309 63.1
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 4.2e-88 330.5 298 63.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.8e-86 325.1 319 59.6
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.9e-86 323.9 321 62.6
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 5.2e-86 323.6 301 60.1
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 2.0e-85 321.6 330 60.0
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.0e-85 321.6 316 59.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 9.7e-85 319.3 299 65.9
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.7e-84 318.5 362 54.4
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 6.3e-84 316.6 312 66.0
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.3e-84 316.6 329 56.5
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.8e-83 315.1 339 54.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.1e-83 314.3 302 58.9
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.0e-82 311.6 284 68.7
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 4.5e-82 310.5 334 57.2
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 7.7e-82 309.7 261 69.7
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.2e-81 308.1 341 57.2
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 2.2e-81 308.1 300 60.7
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 3.8e-81 307.4 353 51.8
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.5e-81 306.2 316 53.8
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.9e-80 305.1 193 74.6
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 5.5e-80 303.5 192 75.5
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 7.2e-80 303.1 335 56.1
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 7.2e-80 303.1 317 57.4
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.6e-79 302.0 319 58.3
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.1e-79 301.6 322 58.1
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.1e-79 301.6 276 60.9
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.7e-79 301.2 343 51.9
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.6e-79 300.8 335 55.2
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 4.7e-79 300.4 318 58.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 6.1e-79 300.1 314 57.3
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 8.0e-79 299.7 347 60.5
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.8e-78 298.5 275 64.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.3e-78 298.1 319 55.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.3e-78 298.1 279 59.9
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.0e-78 297.4 319 55.8
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.0e-78 297.4 319 56.7
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 5.2e-78 297.0 341 53.7
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 8.8e-78 296.2 292 63.7
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.5e-77 295.4 264 62.9
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.6e-77 294.7 342 50.6
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 4.4e-77 293.9 294 58.5
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 5.7e-77 293.5 198 70.7
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 7.5e-77 293.1 347 59.4
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.7e-76 292.0 307 55.7
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.7e-76 292.0 344 52.3
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 2.2e-76 291.6 294 55.4
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.2e-76 291.6 343 54.5
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 3.7e-76 290.8 323 61.0
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 3.7e-76 290.8 302 55.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.8e-76 290.4 265 62.3
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.8e-76 290.4 265 62.3
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 8.2e-76 289.7 267 61.0
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 4.1e-75 287.3 295 56.3
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 7.0e-75 286.6 346 52.3
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 9.1e-75 286.2 348 52.0
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.2e-74 285.8 340 51.2
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.6e-74 285.4 345 51.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.7e-74 284.6 327 55.7
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 4.5e-74 283.9 274 61.7
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 7.7e-74 283.1 202 66.8
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.3e-73 282.3 286 59.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 5.0e-73 280.4 350 50.3
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 6.5e-73 280.0 354 49.7
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.1e-72 279.3 311 49.8
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 3.2e-72 277.7 346 51.4
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 5.5e-72 276.9 325 54.5
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 7.2e-72 276.6 333 49.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.2e-71 275.8 300 56.3
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 2.1e-71 275.0 347 51.9
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 4.7e-71 273.9 346 52.3
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 4.7e-71 273.9 324 54.6
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 6.1e-71 273.5 346 50.6
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.0e-70 272.7 331 53.5
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.3e-70 271.6 196 65.8
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.3e-70 271.6 317 55.5
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 9.8e-69 266.2 350 47.1
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 8.5e-65 253.1 329 45.0
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.9e-64 251.9 283 54.4
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 9.5e-64 249.6 283 54.8
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.8e-63 248.1 278 55.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.4e-62 245.7 296 54.1
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 6.3e-60 236.9 244 60.7
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.8e-59 235.3 291 55.0
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 2.4e-59 235.0 348 52.6
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.3e-56 224.2 147 76.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 3.0e-54 218.0 192 57.3
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 4.0e-54 217.6 149 71.1
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.2e-53 216.1 170 60.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 3.2e-51 208.0 156 66.0
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.1e-46 191.4 131 71.8
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 6.4e-44 183.7 190 45.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 3.2e-43 181.4 194 58.2
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.3e-41 175.3 186 43.5
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.0e-41 174.1 188 47.3
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.1e-38 166.4 132 63.6
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.2e-34 152.9 110 72.7
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 7.8e-34 150.2 187 42.8
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.0e-33 148.3 187 42.8
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.5e-32 143.3 115 65.2
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 2.8e-31 141.7 195 39.5
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 3.6e-31 141.4 203 42.4
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 4.7e-31 141.0 107 68.2
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 4.7e-31 141.0 83 80.7
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 8.1e-31 140.2 98 70.4
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.1e-30 139.8 100 69.0
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.0e-30 137.9 98 70.4
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.8e-30 137.1 97 73.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 8.9e-30 136.7 117 59.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.2e-29 136.3 191 35.6
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 2.6e-29 135.2 102 67.6
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 7.6e-29 133.7 109 64.2
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 6.4e-28 130.6 90 71.1
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.5e-26 124.8 105 60.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.0e-25 121.7 106 63.2
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.1e-25 120.9 87 65.5
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.5e-24 118.6 123 53.7
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.5e-24 118.6 76 63.2
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 5.2e-22 110.9 78 64.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.3e-20 106.3 72 72.2
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.1e-16 93.2 59 71.2
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 4.0e-14 84.7 43 93.0
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.3e-12 79.7 151 29.8
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 2.9e-12 78.6 75 53.3
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.9e-12 77.8 75 60.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 1.4e-11 76.3 64 60.9
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.0e-09 70.1 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.1e-06 60.1 84 38.1
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.4e-06 59.7 121 33.1
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 1.4e-06 59.7 81 40.7
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 1.4e-06 59.7 84 36.9
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 1.8e-06 59.3 84 38.1
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 1.8e-06 59.3 83 36.1
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 1.8e-06 59.3 90 35.6
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 2.4e-06 58.9 84 39.3
Potri.006G202000 Populus trichocarpa HOM05D000142 ORTHO05D007638 3.1e-06 58.5 94 35.1
Ah.02g115740 Amaranthus hybridus HOM05D000142 ORTHO05D007638 4.0e-06 58.2 89 39.3
Duzib093G2001 Durio zibethinus HOM05D000142 ORTHO05D007638 4.0e-06 58.2 90 35.6
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 4.0e-06 58.2 95 36.8
unitig_85.g27337 Utricularia gibba HOM05D000285 ORTHO05D000241 4.0e-06 58.2 77 35.1
unitig_85.g27340 Utricularia gibba HOM05D000285 ORTHO05D000241 4.0e-06 58.2 77 35.1
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 5.3e-06 57.8 140 30.0
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 5.3e-06 57.8 79 36.7
unitig_747.g21645 Utricularia gibba HOM05D000285 ORTHO05D000241 5.3e-06 57.8 77 36.4
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 6.9e-06 57.4 79 38.0
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 6.9e-06 57.4 90 34.4
unitig_62.g23292 Utricularia gibba HOM05D000285 ORTHO05D000241 6.9e-06 57.4 77 35.1
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 9.0e-06 57.0 83 34.9
HanXRQChr01g0005101 Helianthus annuus HOM05D000285 ORTHO05D000241 9.0e-06 57.0 77 36.4
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 9.0e-06 57.0 79 36.7


User provided reference genes

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