Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01604 Eucalyptus grandis HOM05D000246 ORTHO05D007958 2.5e-30 134.8 68 100.0
Eucgr.E01207 Eucalyptus grandis HOM05D000246 ORTHO05D007958 4.2e-14 80.9 47 87.2
Nn1g09149 Nelumbo nucifera HOM05D000246 ORTHO05D007958 1.0e-12 76.3 50 74.0
MBI04_g30770_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007958 1.8e-12 75.5 56 64.3
CANSAT35G0103 Cannabis sativa HOM05D000246 ORTHO05D007958 6.8e-12 73.6 46 76.1
TAR629G0378 Trochodendron aralioides HOM05D000246 ORTHO05D007958 6.8e-12 73.6 47 72.3
Nitab4.5_0000907g0030 Nicotiana tabacum HOM05D000246 ORTHO05D007958 8.8e-12 73.2 47 76.6
Nitab4.5_0001131g0070 Nicotiana tabacum HOM05D000246 ORTHO05D007958 8.8e-12 73.2 47 76.6
AUR62007433 Chenopodium quinoa HOM05D000246 ORTHO05D007958 1.2e-11 72.8 66 57.6
ClCG07G002430 Citrullus lanatus HOM05D000246 ORTHO05D007958 1.2e-11 72.8 47 70.2
CsaV3_3G030270 Cucumis sativus L. HOM05D000246 ORTHO05D007958 1.2e-11 72.8 47 70.2
Potri.003G104300 Populus trichocarpa HOM05D000246 ORTHO05D007958 1.5e-11 72.4 47 74.5
Sopen08g023200 Solanum pennellii HOM05D000246 ORTHO05D007958 2.0e-11 72.0 46 73.9
Sed0002229 Sechium edule HOM05D000246 ORTHO05D007958 2.6e-11 71.6 47 68.1
Aqoxy3G01991 Aquilegia oxysepala HOM05D000246 ORTHO05D007958 3.4e-11 71.2 47 70.2
Cfa012648 Carpinus fangiana HOM05D000246 ORTHO05D007958 3.4e-11 71.2 47 74.5
MELO3C022742.2 Cucumis melo HOM05D000246 ORTHO05D007958 3.4e-11 71.2 47 66.0
AUR62027305 Chenopodium quinoa HOM05D000246 ORTHO05D007958 4.4e-11 70.9 66 56.1
FvH4_5g24180 Fragaria vesca HOM05D000246 ORTHO05D007958 4.4e-11 70.9 47 72.3
PGR042G2144 Punica granatum HOM05D000246 ORTHO05D007958 4.4e-11 70.9 47 70.2
MD00G1078900 Malus domestica HOM05D000246 ORTHO05D007958 7.5e-11 70.1 47 70.2
Peaxi162Scf00445g00914 Petunia axillaris HOM05D000246 ORTHO05D007958 7.5e-11 70.1 46 71.7
SEGI_13716 Sequoiadendron giganteum HOM05D000246 ORTHO05D007958 7.5e-11 70.1 48 66.7
CiPaw.11G104300 Carya illinoinensis HOM05D000246 ORTHO05D007958 9.8e-11 69.7 52 65.4
Atru.chr6.2110 Acer truncatum HOM05D000246 ORTHO05D007958 1.3e-10 69.3 46 69.6
ATR0829G216 Amborella trichopoda HOM05D000246 ORTHO05D007958 1.3e-10 69.3 46 65.2
DCAR_004546 Daucus carota HOM05D000246 ORTHO05D007958 1.3e-10 69.3 46 71.7
Actinidia03316 Actinidia chinensis HOM05D000246 ORTHO05D007958 1.7e-10 68.9 50 62.0
CSS0002005 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 1.7e-10 68.9 50 60.0
CSS0007497 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007958 1.7e-10 68.9 50 60.0
arahy.Tifrunner.gnm1.ann1.4RSR2I Arachis hypogaea HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 63.8
arahy.Tifrunner.gnm1.ann1.QS0FC1 Arachis hypogaea HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 63.8
EL10Ac5g11897 Beta vulgaris HOM05D000246 ORTHO05D007958 2.2e-10 68.6 50 66.0
Ca_25083_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 61.7
Dinv09439 Davidia involucrata HOM05D000246 ORTHO05D007958 2.2e-10 68.6 50 64.0
FAN13G2839 Fragaria x ananassa HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 68.1
FAN18G0721 Fragaria x ananassa HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 68.1
RcHm_v2.0_Chr7g0213961 Rosa chinensis HOM05D000246 ORTHO05D007958 2.2e-10 68.6 47 70.2
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.8e-10 68.2 50 60.0
Ciclev10002300m.g Citrus clementina HOM05D000246 ORTHO05D007958 2.8e-10 68.2 47 66.0
Manes.17G008200 Manihot esculenta HOM05D000246 ORTHO05D007958 2.8e-10 68.2 47 68.1
Ah.02g117420 Amaranthus hybridus HOM05D000246 ORTHO05D007958 3.7e-10 67.8 49 65.3
CAN.G195.30 Capsicum annuum HOM05D000246 ORTHO05D007958 3.7e-10 67.8 46 71.7
TWI56G1093 Tripterygium wilfordii HOM05D000246 ORTHO05D007958 3.7e-10 67.8 47 66.0
SGA_v2.0_scaffold27G11715 Striga asiatica HOM05D000246 ORTHO05D007958 4.8e-10 67.4 45 68.9
THA.LOC104814374 Tarenaya hassleriana HOM05D000246 ORTHO05D007958 6.3e-10 67.0 47 68.1
HPP92_003405 Vanilla planifolia HOM05D000246 ORTHO05D007958 6.3e-10 67.0 46 69.6
Cc00_g05210 Coffea canephora HOM05D000246 ORTHO05D007958 8.3e-10 66.6 45 68.9
Sc23g0003460 Simmondsia chinensis HOM05D000246 ORTHO05D007958 8.3e-10 66.6 46 67.4
BcaB04g18157 Brassica carinata HOM05D000246 ORTHO05D007958 1.1e-09 66.2 50 60.0
Gohir.A08G228200 Gossypium hirsutum HOM05D000246 ORTHO05D007958 1.1e-09 66.2 46 65.2
Prupe.5G018600 Prunus persica HOM05D000246 ORTHO05D007958 1.1e-09 66.2 46 67.4
Sp1g27200 Schrenkiella parvula HOM05D000246 ORTHO05D007958 1.1e-09 66.2 50 60.0
TPR.G17252 Trifolium pratense HOM05D000246 ORTHO05D007958 1.4e-09 65.9 47 57.4
ECA240G3403 Erigeron canadensis HOM05D000246 ORTHO05D007958 1.8e-09 65.5 45 71.1
GSVIVG01036944001 Vitis vinifera HOM05D000246 ORTHO05D007958 1.8e-09 65.5 48 68.8
AL1G49670 Arabidopsis lyrata HOM05D000246 ORTHO05D007958 2.4e-09 65.1 50 58.0
A08p10580 Brassica napus HOM05D000246 ORTHO05D007958 2.4e-09 65.1 50 60.0
BraA08t33056Z Brassica rapa HOM05D000246 ORTHO05D007958 2.4e-09 65.1 50 60.0
Carub.0001s2981 Capsella rubella HOM05D000246 ORTHO05D007958 2.4e-09 65.1 50 58.0
Thhalv10006954m.g Eutrema salsugineum HOM05D000246 ORTHO05D007958 2.4e-09 65.1 50 60.0
COL.COLO4_35077 Corchorus olitorius HOM05D000246 ORTHO05D007958 3.1e-09 64.7 46 65.2
Lalb_Chr16g0380641 Lupinus albus HOM05D000246 ORTHO05D007958 3.1e-09 64.7 47 57.4
Hund14322 Selenicereus undatus HOM05D000246 ORTHO05D007958 3.1e-09 64.7 46 65.2
MSTRG.11835 Avicennia marina HOM05D000246 ORTHO05D007958 4.1e-09 64.3 49 61.2
Lj2g0022743 Lotus japonicus HOM05D000246 ORTHO05D007958 4.1e-09 64.3 47 57.4
CDE04G3137 Ceratophyllum demersum HOM05D000246 ORTHO05D007958 5.4e-09 63.9 50 58.0
VMungo1215G2022 Vigna mungo HOM05D000246 ORTHO05D007958 5.4e-09 63.9 47 57.4
Gohir.D08G248500 Gossypium hirsutum HOM05D000246 ORTHO05D007958 7.0e-09 63.5 45 62.2
Gorai.004G265100 Gossypium raimondii HOM05D000246 ORTHO05D007958 7.0e-09 63.5 45 62.2
Lsat_1_v5_gn_5_59341 Lactuca sativa HOM05D000246 ORTHO05D007958 7.0e-09 63.5 54 57.4
Medtr5g026590 Medicago truncatula HOM05D000246 ORTHO05D007958 7.0e-09 63.5 47 57.4
HanXRQChr03g0082361 Helianthus annuus HOM05D000246 ORTHO05D007958 1.2e-08 62.8 45 66.7
AT1G31360 Arabidopsis thaliana HOM05D000246 ORTHO05D007958 1.6e-08 62.4 50 56.0
BcaC07g37758 Brassica carinata HOM05D000246 ORTHO05D007958 1.6e-08 62.4 50 58.0
BolC8t48143H Brassica oleracea HOM05D000246 ORTHO05D007958 1.6e-08 62.4 50 58.0
PSO063G2533 Papaver somniferum HOM05D000246 ORTHO05D007958 1.6e-08 62.4 46 60.9
Thecc.03G325100 Theobroma cacao HOM05D000246 ORTHO05D007958 1.6e-08 62.4 45 62.2
Zm00001eb026880 Zea mays HOM05D000246 ORTHO05D007958 1.6e-08 62.4 46 63.0
Migut.A00506 Erythranthe guttata HOM05D000246 ORTHO05D007958 2.0e-08 62.0 44 63.6
Phvul.002G126800 Phaseolus vulgaris HOM05D000246 ORTHO05D007958 3.5e-08 61.2 47 57.4
Solyc08g074600.4 Solanum lycopersicum HOM05D000246 ORTHO05D007958 5.9e-08 60.5 48 66.7
Duzib205G1660 Durio zibethinus HOM05D000246 ORTHO05D007958 7.7e-08 60.1 62 50.0
Glyma.09G215200 Glycine max HOM05D000246 ORTHO05D007958 7.7e-08 60.1 47 55.3
Psat2g143080 Pisum sativum HOM05D000246 ORTHO05D007958 2.9e-07 58.2 40 57.5


User provided reference genes

Program Settings