Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01154 Eucalyptus grandis HOM05D001363 ORTHO05D021659 6.5e-31 136.7 68 100.0
Eucgr.B00893 Eucalyptus grandis HOM05D001363 ORTHO05D002212 8.3e-18 93.2 60 83.3
Sabra10G0061400 Salix brachista HOM05D001363 ORTHO05D002212 3.1e-17 91.3 73 68.5
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Haze_11238 Corylus avellana HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Gohir.D02G041300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Oeu064244.1 Olea europaea HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 1.0e-15 86.3 52 82.7
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 80.8
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 82.7
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 80.8
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 80.8
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 80.8
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 1.3e-15 85.9 52 82.7
Eucgr.L02861 Eucalyptus grandis HOM05D001363 ORTHO05D002212 1.7e-15 85.5 50 84.0
CiPaw.02G119800 Carya illinoinensis HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
Cc03_g04350 Coffea canephora HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
FvH4_4g03740 Fragaria vesca HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
Potri.010G081500 Populus trichocarpa HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
Rhsim02G0029900 Rhododendron simsii HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
SHI00528 Sapria himalayana HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 82.7
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 2.2e-15 85.1 52 80.8
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.9e-15 84.7 52 78.8
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 2.9e-15 84.7 52 80.8
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 2.9e-15 84.7 52 80.8
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 2.9e-15 84.7 52 80.8
Eucgr.B00968 Eucalyptus grandis HOM05D001363 ORTHO05D002212 3.8e-15 84.3 50 84.0
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 3.8e-15 84.3 52 78.8
unitig_32.g11721 Utricularia gibba HOM05D001363 ORTHO05D002212 3.8e-15 84.3 49 85.7
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 3.8e-15 84.3 52 78.8
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 78.8
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 78.8
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 5.0e-15 84.0 49 85.7
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 80.8
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 78.8
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 80.8
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 80.8
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 78.8
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 5.0e-15 84.0 52 78.8
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Ca_10841_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Eucgr.B00994 Eucalyptus grandis HOM05D001363 ORTHO05D002212 6.5e-15 83.6 91 57.1
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 6.5e-15 83.6 52 78.8
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 8.5e-15 83.2 52 76.9
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 8.5e-15 83.2 52 76.9
RcHm_v2.0_Chr4g0393441 Rosa chinensis HOM05D001363 ORTHO05D002212 8.5e-15 83.2 52 82.7
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 1.1e-14 82.8 52 78.8
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.5e-14 82.4 91 52.7
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.5e-14 82.4 52 76.9
SEGI_15380 Sequoiadendron giganteum HOM05D001363 ORTHO05D002212 1.5e-14 82.4 52 75.0
Eucgr.F02361 Eucalyptus grandis HOM05D001363 ORTHO05D002212 1.9e-14 82.0 49 83.7
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 1.9e-14 82.0 52 75.0
HPP92_020346 Vanilla planifolia HOM05D001363 ORTHO05D002212 1.9e-14 82.0 49 83.7
Zm00001eb267780 Zea mays HOM05D001363 ORTHO05D002212 5.5e-14 80.5 56 69.6
EL10Ac3g06502 Beta vulgaris HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
CBR_g8885 Chara braunii HOM05D001363 ORTHO05D002212 7.2e-14 80.1 51 74.5
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 78.8
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 7.2e-14 80.1 52 75.0
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 9.4e-14 79.7 52 73.1
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 9.4e-14 79.7 52 73.1
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 9.4e-14 79.7 52 73.1
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 1.6e-13 79.0 52 73.1
Eucgr.B00962 Eucalyptus grandis HOM05D001363 ORTHO05D002212 2.7e-13 78.2 57 75.4
Mapoly0108s0001 Marchantia polymorpha HOM05D001363 ORTHO05D002212 6.1e-13 77.0 52 71.2
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 6.1e-13 77.0 52 71.2
Aqoxy7G01707 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.0e-12 76.3 54 72.2
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 1.0e-12 76.3 52 73.1
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.4e-12 75.9 68 63.2
AUR62042982 Chenopodium quinoa HOM05D001363 ORTHO05D021659 8.8e-12 73.2 52 67.3
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 2.6e-11 71.6 79 54.4
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 4.4e-11 70.9 49 67.3
Eucgr.B00897 Eucalyptus grandis HOM05D001363 ORTHO05D002212 1.3e-10 69.3 76 52.6
RcHm_v2.0_Chr4g0387431 Rosa chinensis HOM05D001363 ORTHO05D000001 1.7e-10 68.9 57 63.2
Cre02.g141846 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 3.7e-10 67.8 53 62.3
BcaC05g28008 Brassica carinata HOM05D001363 ORTHO05D021659 7.0e-09 63.5 51 66.7
C05p40230 Brassica napus HOM05D001363 ORTHO05D021659 7.0e-09 63.5 51 66.7
BolC5t32765H Brassica oleracea HOM05D001363 ORTHO05D021659 7.0e-09 63.5 51 66.7
Eucgr.B00890 Eucalyptus grandis HOM05D001363 ORTHO05D002212 4.5e-08 60.8 60 61.7
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.9e-06 55.5 72 47.2
MCO02G336 Micromonas commoda HOM05D001363 ORTHO05D002212 4.2e-06 54.3 55 54.5
Psat7g146120 Pisum sativum HOM05D001363 ORTHO05D002212 4.2e-06 54.3 34 76.5


User provided reference genes

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