Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 3094.3 1542 100.0
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1626.7 1580 54.2
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1615.9 1567 53.9
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1581.6 1582 53.5
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1578.5 1626 52.3
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1554.3 1585 52.6
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1534.2 1582 52.0
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1532.7 1582 52.0
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1528.1 1582 51.6
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1516.9 1565 52.7
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1516.5 1563 52.5
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1503.4 1585 50.9
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1503.4 1590 51.9
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1498.4 1607 51.2
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1496.5 1582 50.9
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1496.5 1581 51.3
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1495.3 1589 50.8
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1494.9 1580 51.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1493.0 1582 50.9
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1491.5 1581 50.3
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1487.2 1585 50.8
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1483.4 1583 50.5
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1481.8 1583 50.5
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1479.5 1604 50.7
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1475.7 1570 51.1
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1474.9 1583 50.8
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1474.1 1583 50.4
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1464.5 1583 49.5
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1459.1 1583 49.3
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1451.0 1576 49.9
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1450.3 1569 49.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1449.9 1585 49.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1439.1 1585 49.1
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1434.1 1584 50.3
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1434.1 1569 49.1
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1433.3 1590 48.8
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1431.4 1570 48.9
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1429.5 1588 50.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1418.3 1567 48.9
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1415.2 1566 48.8
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1414.8 1670 47.8
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1413.3 1566 48.8
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1412.9 1590 49.9
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1398.6 1569 48.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1394.8 1586 49.2
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1383.6 1580 47.0
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1374.4 1619 46.8
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1370.9 1571 47.7
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1366.7 1584 47.1
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1363.6 1603 47.0
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1349.3 1581 46.2
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1340.5 1591 46.4
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1338.9 1566 47.3
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1325.1 1545 46.9
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1321.2 1572 47.2
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1319.7 1569 45.4
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1310.8 1324 52.9
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1310.4 1606 46.3
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1310.0 1572 46.4
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1307.0 1575 45.5
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1305.4 1585 46.3
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1304.7 1597 45.8
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1301.6 1609 45.8
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1300.4 1584 45.6
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1297.3 2081 38.8
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1294.3 1575 45.1
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1289.6 1598 45.9
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1288.5 1566 46.0
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1285.4 1478 48.0
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1282.7 1585 44.7
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1275.4 1572 45.7
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1274.6 1580 45.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1267.7 1568 45.7
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1267.3 1564 44.9
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1266.9 1565 45.0
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1264.2 1562 44.9
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1261.5 1566 43.8
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1260.7 1570 44.5
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1258.4 1567 45.5
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1252.7 1564 45.5
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1245.7 1564 45.0
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1242.3 1520 45.1
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1236.5 1571 44.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1226.1 1579 43.8
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1224.2 1565 44.2
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1214.9 1557 44.1
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1213.7 1564 44.3
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1212.6 1564 44.2
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1209.9 1200 54.0
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1208.4 1584 42.8
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1203.3 1557 43.9
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1198.7 1584 42.8
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1157.1 1580 43.2
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1141.3 1564 43.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1110.1 1641 41.1
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1092.4 1529 42.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 4.2e-303 1045.4 1617 38.5
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.0e-289 1000.0 1097 49.0
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 1.3e-288 997.3 1625 36.6
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 2.1e-286 989.9 1631 36.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 5.0e-280 968.8 887 59.1
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.1e-239 834.7 1594 34.5
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 6.2e-238 828.9 1421 36.7
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 3.4e-220 770.0 1094 42.0
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.4e-208 731.5 1743 30.4
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 6.7e-208 729.2 1659 31.2
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 4.8e-198 696.4 1711 30.2
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 2.0e-172 611.3 1574 28.6
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 8.6e-163 579.3 810 39.3
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 5.2e-91 340.9 447 40.5
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.6e-82 312.0 581 33.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 2.5e-53 215.7 213 44.6
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.2e-44 186.8 213 41.8
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 9.9e-42 177.2 206 41.7
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.9e-41 175.6 129 58.9
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 6.8e-35 154.5 290 32.1
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-34 153.7 628 25.6
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 2.9e-33 149.1 154 49.4
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 2.0e-26 126.3 209 30.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.2e-18 100.5 94 56.4
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.3e-17 97.1 177 29.9
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.7e-17 96.7 198 32.8
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 4.2e-16 92.0 162 34.6
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.9e-13 83.2 129 38.8
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 5.6e-13 81.6 178 31.5
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 2.2e-09 69.7 72 45.8


User provided reference genes

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