Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 0.0e+00 1225.3 628 100.0
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 5.0e-287 990.7 628 77.7
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 3.7e-282 974.5 629 76.8
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.4e-281 971.8 636 76.4
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 4.6e-280 967.6 662 73.7
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.9e-279 964.5 629 75.0
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 1.6e-277 959.1 628 76.3
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.4e-276 956.1 629 75.2
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 2.4e-276 955.3 629 74.7
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 5.2e-276 954.1 628 74.7
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.5e-275 952.6 628 76.0
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 5.8e-275 950.7 628 74.8
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 7.1e-273 943.7 629 74.4
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.0e-271 939.9 627 73.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 5.1e-271 937.6 628 74.0
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.5e-270 936.0 628 72.8
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 2.5e-270 935.3 628 73.9
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 4.3e-270 934.5 629 73.6
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 7.3e-270 933.7 629 74.6
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.8e-268 929.1 629 73.9
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 4.0e-268 927.9 604 75.8
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 5.2e-268 927.5 629 73.6
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 6.9e-268 927.2 628 73.2
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 4.9e-266 921.0 628 72.9
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 2.7e-264 915.2 630 72.4
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 2.7e-264 915.2 628 72.5
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 4.6e-264 914.4 628 72.8
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 4.6e-264 914.4 628 72.3
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 7.8e-264 913.7 628 71.8
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 1.0e-263 913.3 630 72.4
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.3e-263 912.1 628 71.7
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 3.0e-263 911.8 629 72.2
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 5.1e-263 911.0 628 72.1
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 9.0e-260 900.2 607 72.5
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.5e-259 899.4 627 69.7
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 3.4e-259 898.3 635 71.7
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 3.4e-259 898.3 629 70.1
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 2.4e-257 892.1 632 70.6
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 5.4e-257 891.0 629 71.4
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 2.1e-256 889.0 720 63.8
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 2.7e-256 888.6 629 71.7
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 6.0e-256 887.5 630 69.8
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.8e-252 875.9 630 70.6
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 3.4e-251 871.7 627 70.0
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.2e-250 869.0 629 70.0
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.2e-249 865.1 628 69.6
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.0e-247 860.1 589 72.5
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.5e-246 856.3 628 67.5
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 9.6e-246 853.6 629 67.6
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.7e-245 851.7 628 66.9
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.4e-244 849.7 628 67.2
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.8e-244 849.4 628 66.9
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 4.0e-244 848.2 630 67.0
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.5e-243 846.3 628 66.7
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.6e-243 845.5 629 68.8
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.3e-242 843.2 628 66.1
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 2.9e-242 842.0 626 66.9
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 3.8e-242 841.6 629 67.2
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.1e-241 840.1 631 65.6
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 3.2e-241 838.6 628 65.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 9.3e-241 837.0 627 66.3
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.4e-238 827.4 639 66.2
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.8e-237 824.7 640 66.1
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.8e-236 822.8 649 65.3
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.8e-236 822.8 628 66.7
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 3.9e-231 805.1 628 64.6
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 5.1e-231 804.7 631 64.5
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 4.3e-230 801.6 494 80.2
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 2.4e-228 795.8 596 68.5
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 2.0e-227 792.7 639 66.0
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 4.5e-227 791.6 645 65.0
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.6e-224 783.1 613 65.4
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 2.1e-224 782.7 627 65.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 6.7e-223 777.7 632 61.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.2e-217 758.4 748 56.0
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.8e-215 753.1 629 64.5
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.8e-212 743.0 628 61.3
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 3.1e-196 689.1 644 58.5
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.6e-195 686.8 590 61.7
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 6.8e-191 671.4 629 59.3
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 3.4e-190 669.1 653 57.6
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 1.5e-177 627.1 627 52.8
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 5.6e-177 625.2 427 73.1
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.9e-164 583.6 566 52.5
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 4.6e-163 578.9 566 52.3
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 2.8e-160 569.7 438 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 2.9e-149 533.1 636 45.4
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.8e-144 516.5 441 59.6
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 6.4e-141 505.4 625 46.2
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 4.2e-140 502.7 542 51.5
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 4.3e-137 492.7 627 43.2
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 2.4e-135 486.9 628 45.2
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 2.1e-131 473.8 309 77.0
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 3.1e-119 433.3 360 61.9
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 3.1e-119 433.3 291 75.3
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 9.4e-116 421.8 271 76.8
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.8e-111 407.5 295 68.8
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.0e-109 401.7 286 68.5
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.0e-90 336.7 244 69.7
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.3e-88 329.3 272 60.3
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.7e-86 323.9 227 70.9
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.4e-82 311.6 232 66.4
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 3.7e-80 303.5 256 61.7
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 8.0e-67 259.2 248 55.6
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 1.7e-56 224.9 158 67.7
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 6.4e-56 223.0 186 62.4
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.1e-54 218.0 170 62.4
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 6.0e-54 216.5 705 28.2
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 6.2e-51 206.5 189 60.3
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 3.1e-50 204.1 170 62.9
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.6e-46 190.3 134 70.9
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 3.3e-44 184.1 619 27.5
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 9.9e-41 172.6 135 66.7
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 3.3e-36 157.5 118 65.3
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.4e-33 147.1 105 70.5
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 6.6e-29 133.3 92 67.4
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 1.9e-23 115.2 700 23.0
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.9e-21 107.5 125 48.8
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.5e-20 104.8 73 64.4
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.4e-18 99.0 53 88.7
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.5e-17 95.5 48 97.9
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 4.5e-17 94.0 78 59.0
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.1e-15 89.4 66 65.2
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 2.7e-14 84.7 67 64.2
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.3e-13 82.4 65 64.6
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.3e-11 75.9 65 52.3
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 8.2e-11 73.2 77 48.1
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 2.2e-08 65.1 72 52.8


User provided reference genes

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