Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 9.7e-80 300.1 149 100.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.6e-36 154.5 103 69.9
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 6.2e-34 147.9 102 67.6
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.4e-33 146.7 100 67.0
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 1.4e-33 146.7 100 67.0
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.8e-33 146.4 105 63.8
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 5.2e-33 144.8 106 63.2
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 2.6e-32 142.5 102 63.7
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 7.6e-32 141.0 102 63.7
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.9e-31 138.3 106 62.3
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 6.4e-31 137.9 100 63.0
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.1e-30 137.1 99 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 1.4e-30 136.7 104 60.6
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.1e-30 135.2 99 64.6
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.1e-30 135.2 99 64.6
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 2.7e-29 132.5 103 60.2
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 2.3e-28 129.4 103 56.3
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 6.6e-28 127.9 98 59.2
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-27 126.7 98 58.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.5e-27 126.7 98 58.2
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.6e-27 124.8 102 58.8
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 7.3e-27 124.4 100 59.0
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 1.2e-26 123.6 79 72.2
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 1.6e-26 123.2 103 55.3
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.8e-26 122.5 103 57.3
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 6.2e-26 121.3 103 57.3
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 8.1e-26 120.9 100 58.0
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.1e-25 120.6 122 51.6
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 2.4e-25 119.4 79 68.4
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 3.1e-25 119.0 87 63.2
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 6.9e-25 117.9 87 63.2
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 9.0e-25 117.5 105 53.3
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.2e-24 117.1 80 65.0
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 1.2e-24 117.1 77 68.8
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.5e-24 116.7 76 69.7
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.5e-24 116.7 76 69.7
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.5e-24 116.7 76 69.7
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.5e-24 116.7 79 65.8
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 2.0e-24 116.3 87 62.1
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 2.0e-24 116.3 77 68.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.0e-24 116.3 77 68.8
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 2.0e-24 116.3 79 68.4
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 2.0e-24 116.3 79 68.4
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 2.0e-24 116.3 87 62.1
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 2.0e-24 116.3 87 62.1
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.0e-24 116.3 77 68.8
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 2.0e-24 116.3 87 62.1
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 2.0e-24 116.3 79 68.4
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 2.0e-24 116.3 133 42.9
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 2.0e-24 116.3 77 68.8
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 2.0e-24 116.3 77 68.8
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 2.0e-24 116.3 87 62.1
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.4e-24 115.5 79 68.4
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 4.4e-24 115.2 110 53.6
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 4.4e-24 115.2 77 67.5
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 4.4e-24 115.2 77 66.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 5.8e-24 114.8 76 68.4
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 5.8e-24 114.8 76 68.4
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 5.8e-24 114.8 76 68.4
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 7.6e-24 114.4 133 43.6
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 9.9e-24 114.0 110 52.7
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 9.9e-24 114.0 77 66.2
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 9.9e-24 114.0 87 60.9
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.3e-23 113.6 87 59.8
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 1.3e-23 113.6 77 64.9
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.7e-23 113.2 78 66.7
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 1.7e-23 113.2 89 59.6
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 2.2e-23 112.8 102 54.9
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 2.2e-23 112.8 76 67.1
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.2e-23 112.8 76 67.1
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.9e-23 112.5 77 64.9
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 2.9e-23 112.5 76 65.8
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 3.8e-23 112.1 77 64.9
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 3.8e-23 112.1 77 64.9
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 4.9e-23 111.7 76 65.8
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 4.9e-23 111.7 78 65.4
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 4.9e-23 111.7 76 65.8
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.9e-23 111.7 111 49.5
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 6.4e-23 111.3 136 42.6
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 8.4e-23 110.9 76 64.5
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 8.4e-23 110.9 76 64.5
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 8.4e-23 110.9 79 63.3
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 8.4e-23 110.9 77 66.2
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.1e-22 110.5 76 64.5
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.1e-22 110.5 76 64.5
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 1.9e-22 109.8 96 56.2
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 3.2e-22 109.0 79 59.5
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 3.2e-22 109.0 77 63.6
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 3.2e-22 109.0 77 63.6
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 7.1e-22 107.8 91 58.2
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 1.2e-21 107.1 90 58.9
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 1.2e-21 107.1 79 62.0
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 3.5e-21 105.5 89 58.4
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 4.6e-21 105.1 79 62.0
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 4.6e-21 105.1 71 63.4
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 6.0e-21 104.8 80 57.5
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 7.8e-21 104.4 76 61.8
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 1.7e-20 103.2 76 60.5
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 6.6e-20 101.3 77 61.0
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 8.7e-20 100.9 85 54.1
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.5e-19 100.1 77 62.3
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 2.5e-19 99.4 101 48.5
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.3e-19 98.6 142 38.0
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 5.6e-19 98.2 100 49.0
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 5.6e-19 98.2 54 83.3
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 5.6e-19 98.2 100 49.0
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 9.6e-19 97.4 99 49.5
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 9.6e-19 97.4 99 49.5
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 9.6e-19 97.4 99 49.5
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 1.6e-18 96.7 77 59.7
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.8e-18 95.9 102 49.0
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.8e-18 95.9 102 49.0
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 2.8e-18 95.9 75 58.7
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 6.9e-17 91.3 100 45.0
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.2e-16 90.5 99 47.5
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 1.5e-16 90.1 70 54.3
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 1.5e-16 90.1 72 55.6
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.4e-16 89.0 100 46.0
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 3.4e-16 89.0 76 56.6
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.3e-15 87.0 69 56.5
HanXRQChr01g0023151 Helianthus annuus HOM05D003327 ORTHO05D004535 2.2e-15 86.3 69 58.0
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.1e-14 84.0 68 54.4
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 5.4e-14 81.6 79 51.9
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 5.4e-14 81.6 70 51.4
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 9.3e-14 80.9 64 60.9
HanXRQChr13g0424851 Helianthus annuus HOM05D003327 ORTHO05D004535 9.3e-14 80.9 64 60.9
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 2.7e-13 79.3 64 59.4
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 2.7e-13 79.3 64 59.4
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 2.7e-13 79.3 64 59.4
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 7.9e-13 77.8 64 57.8
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 1.0e-12 77.4 77 50.6
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 1.3e-12 77.0 108 33.3
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 3.0e-12 75.9 69 50.7
Nn2g15286 Nelumbo nucifera HOM05D003327 ORTHO05D004535 3.9e-12 75.5 99 44.4
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 6.7e-12 74.7 77 49.4
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 6.7e-12 74.7 77 49.4
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.9e-11 73.2 56 57.1
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 3.7e-10 68.9 77 46.8
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.2e-10 68.2 138 34.8
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 6.2e-10 68.2 88 43.2
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 8.1e-10 67.8 77 46.8
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 1.4e-09 67.0 38 76.3
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 1.4e-09 67.0 77 45.5
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 2.4e-09 66.2 77 45.5
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 3.1e-09 65.9 75 46.7
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 5.3e-09 65.1 77 44.2
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 9.0e-09 64.3 77 44.2
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 9.9e-08 60.8 131 28.2
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 1.7e-07 60.1 69 44.9
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 6.4e-07 58.2 86 32.6
Lalb_Chr24g0399871 Lupinus albus HOM05D003327 ORTHO05D004535 4.2e-06 55.5 48 54.2


User provided reference genes

Program Settings