Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 8.1e-64 246.9 124 100.0
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 8.1e-64 246.9 124 100.0
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 5.3e-63 244.2 124 99.2
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.5e-62 242.7 124 96.8
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.5e-62 242.7 124 96.8
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 8.4e-61 236.9 123 95.1
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.1e-59 232.3 123 93.5
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 7.9e-59 230.3 123 93.5
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.3e-58 229.6 123 92.7
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.3e-58 229.6 123 92.7
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 1.8e-58 229.2 123 91.9
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 1.8e-58 229.2 123 91.9
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 2.3e-58 228.8 122 93.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 3.9e-58 228.0 123 91.9
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.9e-58 228.0 123 91.9
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.9e-58 228.0 123 91.9
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 5.1e-58 227.6 123 91.1
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 5.1e-58 227.6 123 91.1
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 122 91.8
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 6.7e-58 227.3 123 91.9
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 123 91.1
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 8.7e-58 226.9 123 91.9
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 8.7e-58 226.9 123 90.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 8.7e-58 226.9 123 90.2
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 8.7e-58 226.9 123 91.1
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 1.5e-57 226.1 123 90.2
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 1.5e-57 226.1 123 91.1
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 1.9e-57 225.7 121 91.7
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 90.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 91.1
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 91.1
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 91.1
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 91.1
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 2.5e-57 225.3 121 91.7
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.5e-57 225.3 123 90.2
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 123 91.9
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 3.3e-57 224.9 123 91.1
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 3.3e-57 224.9 121 91.7
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 123 90.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 4.3e-57 224.6 121 90.9
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 4.3e-57 224.6 123 90.2
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 4.3e-57 224.6 123 91.1
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 121 90.9
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 5.7e-57 224.2 121 90.9
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 7.4e-57 223.8 123 90.2
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 7.4e-57 223.8 123 90.2
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 89.4
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 9.6e-57 223.4 125 91.2
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 89.4
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 89.4
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 89.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 89.4
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 123 92.7
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.3e-56 223.0 120 91.7
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 1.6e-56 222.6 123 89.4
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 2.1e-56 222.2 123 88.6
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 2.1e-56 222.2 121 90.1
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 2.8e-56 221.9 123 91.9
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 2.8e-56 221.9 123 91.9
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 2.8e-56 221.9 121 90.1
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 2.8e-56 221.9 126 88.9
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 3.7e-56 221.5 120 90.8
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 89.7
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 88.6
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 90.2
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 6.2e-56 220.7 123 90.2
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 6.2e-56 220.7 123 90.2
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 6.2e-56 220.7 123 90.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 8.2e-56 220.3 123 88.6
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 8.2e-56 220.3 124 90.3
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.1e-55 219.9 123 87.8
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.1e-55 219.9 123 87.8
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 1.1e-55 219.9 126 88.1
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 1.1e-55 219.9 126 88.1
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 90.8
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.4e-55 219.5 123 88.6
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 90.2
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.8e-55 219.2 119 89.9
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.8e-55 219.2 119 89.9
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 88.6
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.8e-55 219.2 123 86.2
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 2.4e-55 218.8 123 89.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 2.4e-55 218.8 127 88.2
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 2.4e-55 218.8 123 85.4
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.4e-55 218.8 124 88.7
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 3.1e-55 218.4 121 88.4
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 4.1e-55 218.0 123 88.6
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 4.1e-55 218.0 123 88.6
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 6.9e-55 217.2 123 87.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 2.6e-54 215.3 123 85.4
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 3.4e-54 214.9 126 88.1
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 4.5e-54 214.5 120 86.7
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.3e-53 213.0 117 87.2
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 8.4e-53 210.3 117 84.6
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.1e-52 209.9 123 82.1
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.1e-52 209.9 114 90.4
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 1.4e-52 209.5 114 91.2
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 1.4e-52 209.5 117 86.3
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 1.9e-52 209.1 123 83.7
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.9e-52 209.1 117 86.3
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 4.2e-52 208.0 114 90.4
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.8e-50 202.6 113 87.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.0e-50 201.8 123 83.7
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.9e-49 199.1 123 78.0
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.8e-48 195.3 118 78.8
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.0e-45 186.8 137 71.5
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 1.3e-45 186.4 119 76.5
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 5.0e-45 184.5 106 85.8
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 3.2e-44 181.8 113 75.2
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 3.3e-41 171.8 91 95.6
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 1.1e-39 166.8 93 84.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.3e-37 159.8 105 77.1
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.5e-33 146.4 109 61.5
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.5e-28 129.8 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.4e-23 112.5 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 6.1e-19 97.8 100 52.0
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 5.4e-15 84.7 50 82.0
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 7.7e-14 80.9 77 55.8
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.8e-07 59.7 31 83.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 1.8e-07 59.7 78 46.2
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 4.1e-07 58.5 110 37.3
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 7.0e-07 57.8 134 31.3
Lalb_Chr01g0003091 Lupinus albus HOM05D002300 ORTHO05D002340 1.6e-06 56.6 81 34.6
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 2.0e-06 56.2 112 33.9
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 2.0e-06 56.2 79 38.0
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 2.0e-06 56.2 84 34.5
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 2.7e-06 55.8 75 36.0
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 2.7e-06 55.8 84 38.1
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
SGA_v2.0_scaffold25G10780 Striga asiatica HOM05D000142 ORTHO05D001253 3.5e-06 55.5 78 37.2
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 4.5e-06 55.1 100 32.0
AagrBONN_evm.TU.Sc2ySwM_344.3377 Anthoceros agrestis HOM05D000142 ORTHO05D001253 4.5e-06 55.1 83 36.1
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 4.5e-06 55.1 72 40.3
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 4.5e-06 55.1 100 33.0
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 4.5e-06 55.1 81 37.0
Actinidia28085 Actinidia chinensis HOM05D000142 ORTHO05D010028 5.9e-06 54.7 79 38.0
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 5.9e-06 54.7 115 32.2
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 5.9e-06 54.7 64 45.3
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 7.7e-06 54.3 118 34.7
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 7.7e-06 54.3 110 35.5


User provided reference genes

Program Settings