Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.6e-255 885.6 447 100.0
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 5.5e-219 764.2 451 85.8
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 3.0e-185 652.1 410 82.7
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 9.1e-182 640.6 448 74.3
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 5.5e-179 631.3 447 70.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.4e-176 621.7 428 74.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 5.9e-173 611.3 453 68.4
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.0e-172 610.5 448 70.1
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.8e-172 608.6 453 69.8
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.2e-171 604.4 447 68.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.4e-169 600.1 450 67.3
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.8e-169 599.7 453 68.0
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 8.9e-169 597.4 453 68.4
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.2e-168 597.0 450 68.0
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.2e-167 592.8 446 68.2
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.7e-167 592.0 448 67.4
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 3.1e-166 589.0 445 67.0
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.4e-166 588.2 448 67.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 7.0e-166 587.8 448 66.7
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 9.2e-166 587.4 448 66.5
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.0e-165 586.3 451 66.5
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 3.5e-165 585.5 502 62.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 5.9e-165 584.7 446 65.7
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 5.9e-165 584.7 461 66.2
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.0e-164 583.9 448 66.5
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.3e-164 583.6 444 67.3
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.3e-164 582.8 431 69.4
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.6e-164 581.3 443 66.1
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.1e-163 580.5 457 65.4
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.9e-163 579.7 433 69.1
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 5.6e-163 578.2 452 65.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 9.5e-163 577.4 451 65.0
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.2e-162 577.0 445 66.3
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-162 576.6 457 65.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.8e-162 575.9 457 65.2
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 4.7e-162 575.1 448 66.5
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 4.7e-162 575.1 449 66.1
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.4e-161 573.5 465 63.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.4e-161 573.5 465 63.9
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.3e-161 572.8 441 65.8
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.1e-161 572.4 454 65.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.5e-160 570.1 452 65.7
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-160 569.7 448 66.1
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.0e-160 569.7 459 64.9
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.4e-160 568.5 459 64.9
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 7.5e-160 567.8 453 65.6
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.4e-158 562.8 444 68.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.2e-158 562.4 447 65.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 4.1e-158 562.0 452 64.4
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 5.4e-158 561.6 451 65.0
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.6e-157 560.1 452 63.9
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.7e-157 559.3 453 63.8
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.7e-157 559.3 454 64.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.9e-155 553.1 443 65.7
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 3.3e-155 552.4 461 64.2
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.6e-155 551.6 462 63.0
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 7.3e-155 551.2 446 64.8
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 1.6e-154 550.1 451 63.6
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.6e-154 548.9 443 64.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 4.7e-154 548.5 405 70.9
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 6.2e-154 548.1 448 63.8
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 2.3e-153 546.2 437 65.2
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.2e-153 545.0 431 66.1
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.5e-152 543.5 450 62.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.0e-152 543.1 441 64.6
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 3.4e-152 542.3 449 63.9
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 4.9e-151 538.5 447 62.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.4e-151 538.1 442 63.8
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.1e-150 537.3 436 64.4
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.4e-150 537.0 435 65.5
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.9e-150 536.6 436 65.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.9e-150 536.6 445 62.7
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 4.1e-150 535.4 435 65.1
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.6e-149 533.5 435 65.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.7e-149 532.7 436 64.9
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.5e-149 532.3 436 64.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.3e-148 529.6 465 62.2
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 5.1e-148 528.5 440 64.3
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 8.6e-148 527.7 536 55.6
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.3e-147 525.8 440 64.1
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 4.3e-147 525.4 405 67.4
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 5.6e-147 525.0 432 63.9
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.6e-146 523.5 442 63.8
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 4.7e-146 521.9 440 63.9
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.3e-145 519.6 447 60.9
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 3.5e-141 505.8 459 58.4
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-139 500.4 444 63.3
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 5.6e-139 498.4 354 71.2
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.1e-137 494.2 443 59.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.2e-135 486.5 455 56.7
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 7.8e-133 478.0 454 57.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 6.6e-132 474.9 449 57.5
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.5e-131 473.0 450 56.4
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.8e-130 469.5 466 58.8
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.8e-122 443.0 426 56.6
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 4.8e-122 442.2 426 56.1
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.1e-121 441.0 268 79.9
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 4.0e-121 439.1 262 80.5
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 5.8e-120 435.3 357 63.3
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.0e-117 425.2 253 80.6
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 7.9e-117 424.9 331 65.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 7.4e-115 418.3 426 53.3
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.8e-114 416.4 426 55.9
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.4e-113 414.1 255 78.0
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.1e-113 412.9 433 49.4
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 4.9e-111 405.6 452 52.0
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.5e-107 393.3 415 51.6
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.9e-103 379.8 229 79.9
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.8e-95 352.8 412 49.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.1e-91 341.3 483 41.6
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.5e-86 323.6 326 59.5
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.9e-85 318.5 324 54.9
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 2.6e-83 313.5 377 47.5
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.1e-81 306.6 287 59.2
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 2.0e-80 303.9 322 54.0
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 5.9e-80 302.4 287 58.9
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.6e-72 276.9 282 52.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.1e-69 267.3 260 53.1
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.8e-66 256.9 212 65.6
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.8e-65 254.2 251 58.2
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.7e-58 229.9 210 60.0
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.2e-54 216.5 404 38.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 8.9e-52 208.8 294 42.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.2e-51 208.4 254 42.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.9e-50 203.0 135 67.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.2e-48 198.4 184 57.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 3.9e-47 193.4 250 43.6
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 5.4e-41 172.9 205 50.2
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 7.0e-41 172.6 106 78.3
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.7e-40 170.6 86 91.9
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.7e-39 167.9 98 82.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.6e-32 143.3 91 73.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.7e-31 141.4 74 87.8
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.8e-29 134.0 100 63.0
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-28 132.1 86 73.3
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.2e-26 124.4 254 30.3
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 6.8e-20 102.8 67 70.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 8.9e-20 102.4 188 37.8
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.7e-18 98.2 93 58.1
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.6e-16 91.7 69 71.0
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.5e-14 85.1 188 33.5
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.6e-13 81.6 65 58.5
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.4e-12 77.8 81 53.1
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.4e-11 73.9 45 73.3
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 2.3e-07 61.2 36 77.8
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 5.1e-07 60.1 87 37.9


User provided reference genes

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