Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.2e-196 691.0 943 100.0
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 2.0e-138 497.7 938 90.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.1e-131 475.3 961 88.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.3e-131 473.0 962 88.4
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 3.8e-129 466.8 339 76.4
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.4e-117 426.0 945 87.7
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 4.1e-91 340.5 360 57.5
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 5.4e-91 340.1 356 57.6
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 9.2e-91 339.3 360 56.7
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.6e-87 327.4 301 57.8
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 8.9e-86 322.8 235 72.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.6e-85 321.2 282 61.7
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 5.8e-85 320.1 336 56.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 9.8e-85 319.3 300 62.0
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 9.8e-85 319.3 351 53.0
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 8.3e-84 316.2 354 57.6
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 8.3e-84 316.2 359 54.0
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-83 315.8 358 55.6
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.2e-83 314.3 329 57.8
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 5.4e-83 313.5 328 57.6
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 4.6e-82 310.5 357 54.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 7.8e-82 309.7 366 53.0
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.0e-81 309.3 321 58.3
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.3e-81 308.1 287 62.0
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 3.0e-81 307.8 340 52.9
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.9e-81 307.4 341 55.4
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.1e-80 305.8 303 60.1
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.1e-80 305.8 353 51.8
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.5e-80 305.4 378 55.0
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.9e-80 305.1 289 60.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.5e-80 304.7 364 53.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.5e-80 304.7 282 59.9
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 4.3e-80 303.9 335 56.1
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 5.6e-80 303.5 349 53.3
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 5.6e-80 303.5 315 56.5
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 7.3e-80 303.1 342 56.1
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 9.5e-80 302.8 369 53.1
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 9.5e-80 302.8 335 54.9
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 1.2e-79 302.4 371 54.4
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.6e-79 302.0 337 54.3
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.6e-79 302.0 205 74.1
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.8e-79 301.2 360 54.7
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 3.6e-79 300.8 250 60.4
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.2e-79 300.1 356 51.4
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 6.2e-79 300.1 328 54.6
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.8e-78 298.5 347 53.9
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 2.3e-78 298.1 297 55.9
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 2.3e-78 298.1 190 73.2
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 2.3e-78 298.1 313 55.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.8e-78 296.6 326 53.1
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.2e-77 295.8 355 53.5
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.5e-77 295.4 304 55.3
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.6e-77 294.7 363 53.4
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.6e-77 294.7 334 52.1
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 3.4e-77 294.3 358 53.9
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 3.4e-77 294.3 346 53.5
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 9.8e-77 292.7 350 53.7
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.7e-76 292.0 355 53.5
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.4e-75 288.9 359 52.9
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 3.2e-75 287.7 308 55.2
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 5.4e-75 287.0 364 52.2
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.2e-74 285.8 355 49.9
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.7e-74 284.6 361 51.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.5e-74 284.3 278 57.6
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 7.8e-74 283.1 348 54.6
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.0e-73 282.7 316 51.9
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.7e-73 282.0 313 55.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.7e-73 282.0 248 64.1
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.1e-73 280.4 355 52.1
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 6.6e-73 280.0 300 52.0
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 8.6e-73 279.6 294 55.1
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 7.3e-72 276.6 359 48.7
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.2e-71 275.8 360 50.3
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.6e-71 275.4 346 52.9
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 2.1e-71 275.0 341 50.7
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.8e-71 274.6 246 61.0
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.8e-71 274.6 246 61.0
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 3.6e-71 274.2 241 61.0
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 6.2e-71 273.5 337 52.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 6.2e-71 273.5 334 48.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-70 271.6 346 52.9
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 3.1e-70 271.2 345 53.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 5.8e-69 266.9 350 50.3
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.3e-68 265.8 354 49.2
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 8.4e-68 263.1 360 47.2
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.9e-67 261.9 354 49.4
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.0e-65 254.6 204 63.2
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.0e-65 254.6 337 48.1
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 7.3e-64 250.0 336 44.9
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 3.1e-62 244.6 338 49.1
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 2.7e-58 231.5 201 57.2
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.0e-57 229.6 152 73.0
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.1e-57 227.3 351 46.2
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 6.6e-57 226.9 201 53.7
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 8.7e-57 226.5 288 51.4
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 9.0e-54 216.5 187 58.3
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.4e-53 214.2 147 72.1
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-51 208.8 170 60.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 2.4e-51 208.4 154 64.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 1.3e-49 202.6 132 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.7e-44 185.7 216 44.0
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.7e-42 178.3 186 46.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 1.9e-40 172.2 188 45.7
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 3.3e-40 171.4 130 65.4
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.6e-37 161.8 138 58.0
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.6e-37 161.8 187 45.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 7.6e-37 160.2 187 45.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 8.4e-36 156.8 111 71.2
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.3e-33 148.7 193 39.4
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.6e-31 142.5 205 43.9
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.3e-31 140.6 94 74.5
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.2e-31 140.2 87 77.0
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 8.2e-31 140.2 114 63.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.1e-30 139.8 114 64.0
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.9e-30 137.1 111 65.8
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.5e-29 136.0 114 64.0
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.0e-29 135.6 88 72.7
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.0e-28 133.3 118 61.9
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 2.9e-28 131.7 114 61.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.2e-27 128.3 91 67.0
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 9.3e-27 126.7 118 58.5
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 9.3e-27 126.7 200 38.0
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 3.5e-26 124.8 91 63.7
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.0e-25 123.2 103 60.2
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.3e-24 118.2 121 55.4
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.8e-23 114.4 113 54.0
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-22 112.8 98 54.1
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.4e-21 108.2 77 64.9
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.2e-19 101.3 70 71.4
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 3.3e-16 91.7 58 70.7
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.4e-14 85.5 46 84.8
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 5.5e-11 74.3 75 49.3
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 9.4e-11 73.6 62 54.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.2e-10 73.2 84 48.8
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 7.9e-10 70.5 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 6.7e-09 67.4 43 72.1
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 6.7e-09 67.4 43 72.1
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.0e-08 65.9 152 29.6
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 9.1e-06 57.0 90 37.8


User provided reference genes

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