Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.2e-234 816.2 427 100.0
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.3e-174 615.9 450 71.6
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 9.4e-168 594.0 457 69.1
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.9e-166 588.6 451 67.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.7e-164 582.0 433 71.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 4.2e-160 568.5 499 62.9
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.2e-159 567.0 453 65.6
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.7e-159 565.1 453 65.8
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.8e-158 563.1 446 65.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 6.7e-158 561.2 450 65.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 8.2e-156 554.3 459 64.3
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.8e-155 553.1 456 66.2
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 4.1e-155 552.0 448 69.2
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 7.0e-155 551.2 454 63.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.0e-154 549.7 454 64.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 5.9e-154 548.1 449 64.4
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.0e-153 547.4 448 64.5
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.0e-153 547.4 432 67.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.1e-152 543.9 453 65.1
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.2e-151 540.4 450 65.3
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 3.6e-151 538.9 451 64.7
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 4.7e-151 538.5 452 62.8
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 8.0e-151 537.7 450 63.1
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 3.0e-150 535.8 455 62.2
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.9e-150 535.4 452 62.2
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.7e-150 534.6 452 64.4
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-149 533.9 438 65.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-149 533.5 452 62.4
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 2.0e-149 533.1 456 62.9
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 3.3e-149 532.3 451 63.9
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-149 531.6 452 61.9
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 9.7e-149 530.8 478 61.1
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 9.7e-149 530.8 478 61.1
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.3e-148 530.4 449 64.1
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.2e-148 529.6 441 63.3
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 8.2e-148 527.7 458 62.7
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.4e-147 526.2 454 61.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.3e-147 525.0 454 62.6
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 2.0e-146 523.1 454 61.2
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.5e-146 521.9 450 62.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.7e-146 521.2 450 62.2
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.3e-145 520.4 450 62.0
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.7e-145 520.0 452 61.1
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.8e-145 518.8 450 61.6
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.8e-145 518.8 450 62.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 6.5e-145 518.1 454 60.6
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 6.5e-145 518.1 452 60.8
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 8.5e-145 517.7 457 61.5
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.2e-144 515.8 452 61.3
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 7.2e-144 514.6 456 61.0
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.1e-143 513.1 450 61.6
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.6e-143 512.3 450 61.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 4.7e-143 511.9 366 73.0
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 4.0e-142 508.8 454 59.3
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 4.0e-142 508.8 461 61.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.2e-142 508.4 454 60.6
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.5e-141 506.9 388 69.3
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.8e-139 500.0 446 60.5
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 7.0e-139 498.0 452 59.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.0e-138 496.5 538 53.7
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.7e-138 496.1 457 59.5
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 4.5e-138 495.4 451 59.9
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.9e-137 492.7 458 57.9
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.5e-137 491.5 470 57.7
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 8.5e-137 491.1 443 59.1
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 2.1e-135 486.5 453 60.3
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 3.6e-135 485.7 455 58.9
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.6e-135 485.7 447 59.5
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 8.0e-135 484.6 376 68.9
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 9.8e-133 477.6 448 58.9
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.8e-132 476.1 361 68.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 3.1e-131 472.6 437 59.0
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 7.0e-131 471.5 437 59.7
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.0e-130 469.9 437 58.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 2.7e-130 469.5 448 57.6
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 5.9e-130 468.4 437 58.8
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.7e-130 468.0 449 56.8
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 6.6e-129 464.9 437 58.6
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 8.6e-129 464.5 399 63.2
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 8.6e-129 464.5 437 58.8
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 7.2e-128 461.5 467 54.6
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.7e-127 458.8 435 57.9
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 8.0e-127 458.0 440 57.7
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.0e-126 457.6 440 57.7
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.4e-126 457.2 438 58.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 8.9e-126 454.5 439 58.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 5.7e-125 451.8 438 57.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.3e-121 440.7 440 56.8
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.0e-121 438.7 453 53.6
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.3e-120 435.6 445 53.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 8.0e-119 431.4 467 54.2
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.9e-116 422.9 354 64.1
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 8.3e-116 421.4 472 50.4
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.0e-113 414.5 453 51.7
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.2e-109 401.0 463 50.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 9.2e-107 391.3 431 52.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 8.6e-105 384.8 431 50.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 8.9e-102 374.8 262 72.9
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.9e-100 369.0 296 72.0
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.9e-99 367.1 430 55.6
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.1e-98 363.6 376 52.7
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.7e-98 363.2 268 71.6
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 4.6e-98 362.5 408 53.4
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.0e-97 361.3 381 51.7
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 3.9e-97 359.4 255 71.0
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 6.6e-97 358.6 331 58.9
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.1e-94 349.7 379 50.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.1e-94 349.7 253 72.7
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 4.4e-93 345.9 326 59.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-90 337.8 321 58.6
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.6e-85 320.1 229 72.5
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 9.9e-85 318.2 288 60.4
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 5.1e-81 305.8 422 45.0
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.3e-80 302.8 291 58.4
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-77 294.7 284 54.6
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.7e-76 290.8 355 48.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.1e-75 288.1 494 39.9
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-74 284.6 216 69.9
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 6.1e-50 202.6 261 43.7
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.3e-48 196.8 188 56.4
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.8e-47 193.7 369 37.9
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.4e-46 190.7 232 50.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.2e-42 178.3 209 52.2
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.7e-42 177.2 183 48.1
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 7.9e-42 175.6 200 48.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.0e-41 175.3 98 88.8
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.8e-41 174.5 106 82.1
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 5.7e-40 169.5 86 90.7
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 7.7e-37 159.1 190 44.2
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 2.7e-34 150.6 210 44.8
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 2.3e-33 147.5 74 91.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 8.5e-28 129.0 136 47.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 5.5e-27 126.3 86 70.9
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 7.0e-22 109.4 208 36.1
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.2e-16 92.0 96 51.0
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.1e-14 83.6 59 66.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-11 75.5 150 36.7
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.4e-08 63.5 67 49.3
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.3e-07 62.0 48 56.2
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 8.3e-07 59.3 87 36.8
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 5.4e-06 56.6 72 38.9
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 9.2e-06 55.8 150 30.0


User provided reference genes

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