Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 2161.0 1195 100.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1887.5 1198 86.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1858.6 1198 84.0
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1857.8 1198 86.3
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1854.0 1195 85.9
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1837.4 1136 88.6
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1833.2 1197 83.5
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1828.5 1205 83.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1821.2 1217 82.7
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1820.8 1197 84.3
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1807.3 1231 79.5
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1807.0 1197 81.2
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1801.2 1199 81.8
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1801.2 1198 82.1
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1797.7 1207 81.9
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1796.6 1174 82.4
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1792.7 1198 82.0
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1791.5 1198 82.5
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1791.2 1199 80.3
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1782.7 1198 81.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1781.1 1197 82.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1781.1 1197 81.6
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1779.2 1202 80.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1777.3 1209 79.2
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1771.1 1195 81.5
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1768.1 1211 78.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1761.9 1202 79.0
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1760.7 1198 82.3
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1756.5 1261 77.6
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1756.1 1202 78.9
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1755.3 1196 81.8
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1755.0 1206 80.8
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1753.8 1202 80.8
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1750.7 1198 80.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1747.6 1202 80.6
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1742.2 1187 79.2
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1737.6 1196 78.6
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1733.4 1202 77.2
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1733.4 1199 78.4
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1726.8 1204 79.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1724.5 1206 79.8
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1724.5 1204 78.2
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1723.0 1179 79.6
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1722.2 1215 78.8
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1719.5 1226 78.1
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1718.7 1200 76.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1718.0 1197 77.9
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1716.0 1208 77.1
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1714.9 1199 78.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1712.6 1251 77.1
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1711.8 1198 78.6
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1708.3 1195 78.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1199 76.9
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1702.2 1203 77.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1698.3 1198 76.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1695.6 1205 77.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1692.9 1211 78.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1676.8 1205 75.8
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1674.8 1220 77.3
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1673.3 1166 78.2
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1662.1 1173 78.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1661.7 1187 76.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1660.6 1395 70.6
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1659.0 1220 74.2
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1166 77.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1635.9 1194 74.9
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1183 76.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1205 75.5
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1168 76.3
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1614.0 1230 71.9
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1611.3 1122 77.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1610.9 1080 82.2
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1605.9 1208 72.4
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1602.8 1200 71.8
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1598.2 1219 73.0
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1578.5 1198 74.6
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1574.3 1302 69.4
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1569.3 1202 73.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1568.5 1200 72.8
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1567.0 1182 74.5
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1558.1 1199 70.6
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1556.2 1200 70.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1556.2 1200 70.0
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1550.0 1197 73.9
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1548.9 1198 73.4
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1548.1 1202 71.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1538.9 1198 69.7
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1535.0 1199 71.3
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1192 71.9
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1531.5 1202 71.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1530.0 1198 71.5
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1528.1 1206 70.9
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1510.0 1194 69.1
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1507.7 1207 68.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1486.1 1173 72.5
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1464.5 1181 68.6
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1451.4 1260 66.0
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1433.7 930 82.7
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1415.2 1205 65.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1408.7 879 81.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1404.8 872 84.9
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1397.9 1215 66.0
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1373.2 1186 64.6
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1240.7 790 84.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1229.5 839 77.2
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1191.4 886 78.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1180.6 760 83.0
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1162.5 1221 55.0
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1097.4 797 72.5
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.7e-299 1033.1 667 80.4
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 5.4e-298 1028.1 970 63.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 6.9e-293 1011.1 925 65.9
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.0e-281 971.5 805 69.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.4e-214 748.8 610 67.7
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-194 684.5 532 67.3
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 2.6e-175 620.5 477 72.7
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.6e-172 611.3 377 82.8
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.3e-171 607.4 961 41.3
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.9e-158 563.1 442 70.8
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.2e-156 558.5 293 92.8
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-127 462.2 375 72.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.6e-127 461.8 365 74.5
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 2.2e-126 458.0 1151 33.0
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 5.3e-120 436.8 236 89.8
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.2e-118 431.4 832 39.3
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.0e-115 420.6 313 71.6
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 7.5e-98 363.2 555 44.7
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.7e-97 362.1 1008 29.2
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.2e-89 335.1 212 77.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.1e-88 330.9 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.1e-88 330.9 181 86.2
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-87 328.6 173 91.3
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-85 322.8 215 77.2
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.9e-85 322.0 215 77.2
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.4e-80 305.8 224 71.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 3.2e-80 304.7 335 58.5
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 2.5e-77 295.0 381 54.3
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 3.6e-76 291.2 357 57.7
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.3e-65 256.1 391 45.8
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.5e-61 242.7 340 48.5
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.0e-59 234.6 164 72.6
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 5.3e-59 234.2 134 88.8
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 2.2e-57 228.8 318 44.0
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.8e-57 228.0 195 73.3
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.2e-56 224.9 154 74.7
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.3e-52 213.0 325 43.4
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.0e-51 206.8 138 72.5
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 5.5e-48 197.6 254 55.9
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-43 183.3 169 63.3
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 4.6e-39 167.9 120 69.2
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.1e-38 164.5 95 84.2
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.8e-35 156.0 222 45.0
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.7e-33 149.4 103 81.6
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.2e-32 145.2 91 78.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 5.5e-32 144.4 123 64.2
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 9.4e-32 143.7 213 44.6
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.1e-31 142.5 75 90.7
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 4.6e-31 141.4 119 72.3
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.0e-26 125.9 75 80.0
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.3e-25 123.2 113 64.6
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 2.9e-25 122.1 87 67.8
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.1e-24 120.2 97 74.2
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.9e-24 119.4 83 67.5
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 3.9e-22 111.7 65 86.2
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.0e-21 109.4 72 73.6
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 7.7e-18 97.4 69 65.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.7e-17 96.3 57 75.4
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 2.2e-17 95.9 59 84.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 3.8e-17 95.1 57 73.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-17 95.1 57 78.9
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 5.2e-14 84.7 126 45.2
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 3.7e-12 78.6 56 64.3
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 4.8e-12 78.2 46 84.8
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 2.0e-10 72.8 53 69.8
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.7e-09 69.7 149 37.6
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 3.8e-09 68.6 50 70.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 9.4e-08 63.9 42 69.0
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 8.0e-07 60.8 47 55.3
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 5.2e-06 58.2 61 55.7


User provided reference genes

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