Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 2622.4 1321 100.0
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 2389.8 1213 99.2
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1997.6 1323 76.0
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1993.8 1323 76.0
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1944.1 1323 74.7
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1853.6 1327 70.9
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1843.2 1323 71.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1835.1 1335 70.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1745.7 1328 66.8
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1723.8 1347 65.9
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1721.8 1328 66.0
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1702.6 1377 64.8
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1682.9 1347 65.0
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1655.6 1332 64.1
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1641.3 1331 63.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1629.0 1329 63.2
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1618.6 1329 62.6
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1605.9 1328 62.8
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1605.9 1329 62.5
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1604.0 1328 61.3
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1600.9 1330 61.6
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1592.0 1354 61.3
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1584.7 1330 61.8
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1580.8 1330 61.6
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1577.4 1321 60.6
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1576.6 1329 61.1
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1573.9 1330 61.4
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1573.1 1323 60.2
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1572.0 1329 60.3
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1569.3 1326 61.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1567.7 1329 59.8
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1560.0 1327 59.3
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1559.7 1333 60.8
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1554.3 1327 59.4
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1535.8 1327 59.0
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1534.6 1416 58.1
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1521.5 1320 58.3
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1521.1 1323 58.4
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1520.0 1320 59.7
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1509.6 1324 58.8
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1503.0 1331 57.9
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1500.3 1356 57.6
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1496.5 1329 58.8
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1495.3 1323 59.0
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1495.3 1331 58.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1494.9 1324 57.9
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1491.9 1320 57.9
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1475.7 1330 57.3
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1470.3 1331 57.5
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1465.3 1323 57.6
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1461.4 1323 57.4
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1461.0 1324 56.6
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1453.0 1323 56.9
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1442.6 1323 56.2
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1441.4 1329 56.7
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1438.7 1330 56.6
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1435.2 1329 57.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1435.2 1366 55.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1433.3 1347 56.8
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1428.7 1328 55.9
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1426.0 1324 56.2
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1415.6 1355 55.0
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1402.5 1320 55.2
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1401.3 1374 54.1
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1397.9 1825 45.3
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1393.3 1278 58.1
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1381.3 1343 55.3
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1349.0 1322 53.8
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1344.7 1101 60.9
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1339.3 1322 53.1
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1327.4 1324 53.0
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1320.8 1334 52.3
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1317.4 1335 52.1
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1311.2 1328 52.8
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1303.9 1328 52.5
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1296.6 1324 52.9
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1285.0 1322 51.4
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1271.9 1328 50.7
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1270.0 1327 51.2
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1263.8 895 71.7
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1246.5 1315 50.3
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1246.1 1325 50.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1243.0 1321 50.3
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1239.6 1322 50.2
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1239.2 1325 50.1
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1237.2 1326 51.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1232.2 1316 50.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1230.7 1316 50.5
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1228.0 1316 50.1
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1227.6 1325 49.7
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1226.8 1326 50.0
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1222.6 1317 50.2
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1218.0 1318 50.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1216.1 1318 50.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1214.1 1318 49.8
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1207.2 1372 49.1
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1172.5 1267 50.1
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1134.0 1317 47.8
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1092.4 1349 44.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1077.0 1359 44.4
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 3.9e-297 1025.4 1109 50.0
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 2.8e-287 992.6 1358 41.5
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 2.0e-285 986.5 1366 41.1
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.9e-243 847.0 1310 39.9
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 4.4e-208 729.6 1451 34.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 4.3e-195 686.4 1441 33.2
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.8e-178 630.6 1395 32.1
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 8.2e-162 575.9 1333 30.8
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 8.8e-140 502.7 541 48.4
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.7e-63 249.2 569 30.8
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-55 223.4 638 29.0
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.6e-53 216.1 218 45.4
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 1.3e-50 206.5 163 62.0
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.9e-50 205.3 218 45.0
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.5e-38 165.6 187 47.6
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 6.9e-36 157.5 298 33.2
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 2.2e-29 136.0 209 32.5
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.1e-28 133.7 95 67.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 3.9e-23 115.2 125 46.4
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.7e-21 109.8 177 33.9
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 8.2e-21 107.5 173 34.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 7.4e-14 84.3 110 36.4
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.4e-12 80.1 64 53.1
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.2e-11 77.0 64 51.6
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.9e-09 69.7 205 28.3
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.6e-08 66.6 57 59.6
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 3.0e-07 62.4 82 43.9


User provided reference genes

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