Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10719 Davidia involucrata HOM05D001076 ORTHO05D005313 1.1e-241 839.7 479 100.0
Dinv24006 Davidia involucrata HOM05D001076 ORTHO05D005313 1.2e-187 660.2 467 85.9
CSS0006132 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D005313 4.7e-160 568.5 481 76.3
Actinidia24477 Actinidia chinensis HOM05D001076 ORTHO05D005313 3.1e-151 539.3 481 73.2
Actinidia06991 Actinidia chinensis HOM05D001076 ORTHO05D005313 7.8e-147 524.6 456 74.3
Hma1.2p1_1632F.1_g294685 Hydrangea macrophylla HOM05D001076 ORTHO05D005313 1.4e-143 513.8 466 72.7
vmacro04099 Vaccinium macrocarpon HOM05D001076 ORTHO05D005313 4.3e-137 492.3 452 71.5
Manes.05G195600 Manihot esculenta HOM05D001076 ORTHO05D005313 5.6e-137 491.9 472 68.0
Thecc.09G338800 Theobroma cacao HOM05D001076 ORTHO05D005313 8.1e-136 488.0 446 70.4
GSVIVG01037494001 Vitis vinifera HOM05D001076 ORTHO05D005313 5.3e-135 485.3 466 69.5
Duzib170G0755 Durio zibethinus HOM05D001076 ORTHO05D005313 6.9e-135 485.0 443 69.8
Haze_23682 Corylus avellana HOM05D001076 ORTHO05D005313 2.0e-134 483.4 529 62.8
Nn7g37238 Nelumbo nucifera HOM05D001076 ORTHO05D005313 1.3e-133 480.7 460 68.9
Gorai.003G140800 Gossypium raimondii HOM05D001076 ORTHO05D005313 4.2e-132 475.7 447 69.6
Gohir.D03G133700 Gossypium hirsutum HOM05D001076 ORTHO05D005313 1.2e-131 474.2 447 69.4
Ciclev10014180m.g Citrus clementina HOM05D001076 ORTHO05D005313 2.1e-131 473.4 472 68.6
Oeu025934.1 Olea europaea HOM05D001076 ORTHO05D005313 4.6e-131 472.2 475 67.2
Atru.chr3.2884 Acer truncatum HOM05D001076 ORTHO05D005313 3.9e-130 469.2 477 66.9
Cpa.g.sc34.223 Carica papaya HOM05D001076 ORTHO05D005313 8.7e-130 468.0 477 66.2
Gorai.009G105800 Gossypium raimondii HOM05D001076 ORTHO05D005313 8.7e-130 468.0 477 65.8
Gohir.A05G101900 Gossypium hirsutum HOM05D001076 ORTHO05D005313 1.9e-129 466.8 477 65.6
PGR102G0053 Punica granatum HOM05D001076 ORTHO05D005313 2.5e-129 466.5 438 65.5
Solyc06g073550.3 Solanum lycopersicum HOM05D001076 ORTHO05D005313 4.3e-129 465.7 431 70.1
Gohir.A03G034600 Gossypium hirsutum HOM05D001076 ORTHO05D005313 1.3e-128 464.2 447 68.5
Sopen06g029910 Solanum pennellii HOM05D001076 ORTHO05D005313 2.8e-128 463.0 431 70.1
Hund08090 Selenicereus undatus HOM05D001076 ORTHO05D005313 3.1e-127 459.5 462 69.0
LjContig00564g0003968 Lotus japonicus HOM05D001076 ORTHO05D005313 4.0e-127 459.1 464 67.7
TAR636G0566 Trochodendron aralioides HOM05D001076 ORTHO05D005313 9.0e-127 458.0 498 65.5
Potri.009G018100 Populus trichocarpa HOM05D001076 ORTHO05D005313 2.0e-126 456.8 452 69.0
Nitab4.5_0002368g0120 Nicotiana tabacum HOM05D001076 ORTHO05D005313 3.4e-126 456.1 407 72.7
Gohir.D05G101600 Gossypium hirsutum HOM05D001076 ORTHO05D005313 4.5e-126 455.7 490 63.3
CAN.G65.193 Capsicum annuum HOM05D001076 ORTHO05D005313 5.8e-126 455.3 409 71.9
CsaV3_4G017360 Cucumis sativus L. HOM05D001076 ORTHO05D005313 5.8e-126 455.3 470 64.9
Potri.001G220100 Populus trichocarpa HOM05D001076 ORTHO05D005313 1.7e-125 453.8 437 69.6
RcHm_v2.0_Chr5g0050001 Rosa chinensis HOM05D001076 ORTHO05D005313 2.2e-125 453.4 461 67.7
Peaxi162Scf00973g00315 Petunia axillaris HOM05D001076 ORTHO05D005313 8.4e-125 451.4 432 68.3
Prupe.6G155800 Prunus persica HOM05D001076 ORTHO05D005313 3.2e-124 449.5 387 65.9
EL10Ac9g22356 Beta vulgaris HOM05D001076 ORTHO05D005313 4.2e-124 449.1 477 63.9
Glyma.02G275300 Glycine max HOM05D001076 ORTHO05D005313 3.5e-123 446.0 460 69.1
Sc21g0000250 Simmondsia chinensis HOM05D001076 ORTHO05D005313 1.3e-122 444.1 471 66.0
Glyma.14G040900 Glycine max HOM05D001076 ORTHO05D005313 5.1e-122 442.2 452 68.8
CANSAT54G1858 Cannabis sativa HOM05D001076 ORTHO05D005313 6.7e-122 441.8 464 66.4
FvH4_3g27710 Fragaria vesca HOM05D001076 ORTHO05D005313 1.5e-121 440.7 470 65.1
Oeu032039.2 Olea europaea HOM05D001076 ORTHO05D005313 1.5e-121 440.7 496 62.9
MD00G1106400 Malus domestica HOM05D001076 ORTHO05D005313 1.9e-121 440.3 475 64.6
Cc01_g06920 Coffea canephora HOM05D001076 ORTHO05D005313 1.6e-120 437.2 417 68.6
Cfa010270 Carpinus fangiana HOM05D001076 ORTHO05D005313 4.8e-120 435.6 474 65.2
MD11G1183000 Malus domestica HOM05D001076 ORTHO05D005313 4.8e-120 435.6 476 64.9
TWI79G0397 Tripterygium wilfordii HOM05D001076 ORTHO05D005313 6.2e-120 435.3 411 69.8
ClCG02G024230 Citrullus lanatus HOM05D001076 ORTHO05D005313 2.4e-119 433.3 512 58.6
SGA_v2.0_scaffold29G12156 Striga asiatica HOM05D001076 ORTHO05D005313 4.0e-119 432.6 472 56.1
VMungo0647G0819 Vigna mungo HOM05D001076 ORTHO05D005313 5.3e-119 432.2 481 64.4
DCAR_028376 Daucus carota HOM05D001076 ORTHO05D005313 2.0e-118 430.3 443 66.8
Sabra09G0010600 Salix brachista HOM05D001076 ORTHO05D005313 1.0e-117 427.9 352 67.6
Phvul.008G206300 Phaseolus vulgaris HOM05D001076 ORTHO05D005313 1.3e-117 427.6 453 66.7
MSTRG.12429 Avicennia marina HOM05D001076 ORTHO05D005313 2.9e-117 426.4 452 65.3
MSTRG.17645 Avicennia marina HOM05D001076 ORTHO05D005313 2.9e-117 426.4 458 63.3
Lalb_Chr04g0249621 Lupinus albus HOM05D001076 ORTHO05D005313 1.9e-116 423.7 411 71.0
Sed0000524 Sechium edule HOM05D001076 ORTHO05D005313 3.2e-116 422.9 474 63.7
QL01p007505 Quercus lobata HOM05D001076 ORTHO05D005313 7.1e-116 421.8 316 71.8
SalBow6G5099 Salvia bowleyana HOM05D001076 ORTHO05D005313 7.1e-116 421.8 455 64.4
MBI19_g06402_MAGBIO Magnolia biondii HOM05D001076 ORTHO05D005313 1.6e-115 420.6 473 63.6
Sed0024490 Sechium edule HOM05D001076 ORTHO05D005313 2.7e-115 419.9 378 62.2
TPR.G11306 Trifolium pratense HOM05D001076 ORTHO05D005313 2.7e-115 419.9 454 65.9
Migut.D00698 Erythranthe guttata HOM05D001076 ORTHO05D005313 3.5e-115 419.5 476 59.7
arahy.Tifrunner.gnm1.ann1.DIB5MP Arachis hypogaea HOM05D001076 ORTHO05D005313 2.5e-113 413.3 422 68.7
Medtr5g088200 Medicago truncatula HOM05D001076 ORTHO05D005313 7.4e-113 411.8 406 69.7
Eucgr.B03778 Eucalyptus grandis HOM05D001076 ORTHO05D005313 1.6e-112 410.6 409 68.5
Psat2g021800 Pisum sativum HOM05D001076 ORTHO05D005313 1.6e-112 410.6 407 69.8
ECA238G0666 Erigeron canadensis HOM05D001076 ORTHO05D005313 1.1e-111 407.9 412 69.7
arahy.Tifrunner.gnm1.ann1.LSK0UK Arachis hypogaea HOM05D001076 ORTHO05D005313 5.3e-111 405.6 409 69.2
Ca_06162_v3 Cicer arietinum L. HOM05D001076 ORTHO05D005313 1.5e-110 404.1 416 68.5
TWI31G1498 Tripterygium wilfordii HOM05D001076 ORTHO05D005313 1.7e-109 400.6 418 65.8
Aqoxy1G00101 Aquilegia oxysepala HOM05D001076 ORTHO05D005313 1.9e-108 397.1 428 65.0
COL.COLO4_18350 Corchorus olitorius HOM05D001076 ORTHO05D005313 2.5e-108 396.7 477 53.0
Thhalv10012690m.g Eutrema salsugineum HOM05D001076 ORTHO05D005313 2.1e-107 393.7 420 62.6
Sp6g23360 Schrenkiella parvula HOM05D001076 ORTHO05D005313 1.0e-106 391.3 475 58.3
AT5G21160 Arabidopsis thaliana HOM05D001076 ORTHO05D005313 6.7e-106 388.7 478 58.2
AL6G32780 Arabidopsis lyrata HOM05D001076 ORTHO05D005313 1.5e-105 387.5 478 57.9
PSO384G3024 Papaver somniferum HOM05D001076 ORTHO05D005313 1.5e-105 387.5 468 60.3
PSO339G4393 Papaver somniferum HOM05D001076 ORTHO05D005313 2.5e-105 386.7 468 60.0
SalBow3G3618 Salvia bowleyana HOM05D001076 ORTHO05D005313 1.1e-103 381.3 477 57.7
Aa31LG1G13620 Aethionema arabicum HOM05D001076 ORTHO05D005313 2.6e-102 376.7 383 56.1
SGA_v2.0_scaffold79G25564 Striga asiatica HOM05D001076 ORTHO05D005313 1.7e-101 374.0 372 58.1
MELO3C014708.2 Cucumis melo HOM05D001076 ORTHO05D005313 2.2e-101 373.6 470 49.8
AUR62025106 Chenopodium quinoa HOM05D001076 ORTHO05D005313 5.0e-101 372.5 433 61.4
Ah.01g014660 Amaranthus hybridus HOM05D001076 ORTHO05D005313 6.5e-101 372.1 411 65.7
CARHR191710 Cardamine hirsuta HOM05D001076 ORTHO05D005313 6.5e-101 372.1 447 59.3
A10p18920 Brassica napus HOM05D001076 ORTHO05D005313 8.5e-101 371.7 476 56.7
C09p54900 Brassica napus HOM05D001076 ORTHO05D005313 1.4e-100 370.9 474 56.3
BraA10t43969Z Brassica rapa HOM05D001076 ORTHO05D005313 1.4e-100 370.9 474 56.5
BcaB05g22768 Brassica carinata HOM05D001076 ORTHO05D005313 2.5e-100 370.2 469 55.9
BcaB08g36479 Brassica carinata HOM05D001076 ORTHO05D005313 2.5e-100 370.2 471 56.7
BcaC03g13841 Brassica carinata HOM05D001076 ORTHO05D005313 2.5e-100 370.2 471 56.1
BolC9t58351H Brassica oleracea HOM05D001076 ORTHO05D005313 2.5e-100 370.2 472 56.1
BcaC04g19520 Brassica carinata HOM05D001076 ORTHO05D005313 4.2e-100 369.4 476 56.5
ATR0307G062 Amborella trichopoda HOM05D001076 ORTHO05D005313 5.5e-100 369.0 401 65.3
Carub.0006s1947 Capsella rubella HOM05D001076 ORTHO05D005313 5.5e-100 369.0 410 62.0
Lalb_Chr17g0347591 Lupinus albus HOM05D001076 ORTHO05D005313 4.6e-99 365.9 379 56.7
AUR62037158 Chenopodium quinoa HOM05D001076 ORTHO05D005313 1.4e-98 364.4 473 57.1
THA.LOC104810960 Tarenaya hassleriana HOM05D001076 ORTHO05D005313 1.4e-98 364.4 374 57.5
BolC2t07110H Brassica oleracea HOM05D001076 ORTHO05D005313 3.9e-98 362.8 404 62.1
Lsat_1_v5_gn_2_38521 Lactuca sativa HOM05D001076 ORTHO05D005313 6.7e-98 362.1 422 54.0
FAN16G3163 Fragaria x ananassa HOM05D001076 ORTHO05D005313 5.7e-97 359.0 499 47.9
HPP92_028183 Vanilla planifolia HOM05D001076 ORTHO05D005313 7.4e-97 358.6 442 60.0
FAN25G3724 Fragaria x ananassa HOM05D001076 ORTHO05D005313 3.7e-96 356.3 343 60.9
CDE04G2270 Ceratophyllum demersum HOM05D001076 ORTHO05D005313 1.5e-94 350.9 462 57.1
BNapus_Darmor_BZH_scaffold_38p01060 Brassica napus HOM05D001076 ORTHO05D005313 1.4e-92 344.4 382 52.9
BraA02t05622Z Brassica rapa HOM05D001076 ORTHO05D005313 5.5e-92 342.4 382 52.6
HanXRQChr06g0180661 Helianthus annuus HOM05D001076 ORTHO05D005313 4.7e-91 339.3 398 63.6
Duzib168G1797 Durio zibethinus HOM05D001076 ORTHO05D005313 1.4e-90 337.8 329 58.7
CDE07G1662 Ceratophyllum demersum HOM05D001076 ORTHO05D005313 1.5e-81 307.8 338 66.3
SEGI_14698 Sequoiadendron giganteum HOM05D001076 ORTHO05D005313 3.7e-80 303.1 400 60.8
GSVIVG01029892001 Vitis vinifera HOM05D001076 ORTHO05D005313 6.3e-80 302.4 447 52.6
FAN11G3590 Fragaria x ananassa HOM05D001076 ORTHO05D005313 1.7e-77 294.3 333 55.3
Migut.N02395 Erythranthe guttata HOM05D001076 ORTHO05D005313 5.0e-77 292.7 458 47.6
CiPaw.13G121400 Carya illinoinensis HOM05D001076 ORTHO05D005313 8.8e-74 282.0 275 61.5
Os01g0266000 Oryza sativa ssp. japonica HOM05D001076 ORTHO05D005313 2.6e-73 280.4 390 56.4
Mapoly0082s0081 Marchantia polymorpha HOM05D001076 ORTHO05D005313 1.6e-67 261.2 424 52.4
Pp3c11_24960 Physcomitrium patens HOM05D001076 ORTHO05D005313 7.7e-62 242.3 434 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2161 Anthoceros agrestis HOM05D001076 ORTHO05D005313 3.3e-60 236.9 448 50.2
Zm00001eb333210 Zea mays HOM05D001076 ORTHO05D005313 2.1e-59 234.2 467 47.3
Pp3c7_8450 Physcomitrium patens HOM05D001076 ORTHO05D005313 4.1e-55 219.9 413 49.9
Peaxi162Scf00355g00111 Petunia axillaris HOM05D001076 ORTHO05D005313 6.6e-53 212.6 312 43.9
CBR_g40192 Chara braunii HOM05D001076 ORTHO05D005313 3.5e-46 190.3 504 41.5
Nitab4.5_0010831g0020 Nicotiana tabacum HOM05D001076 ORTHO05D005313 1.5e-44 184.9 107 81.3
Duzib168G0566 Durio zibethinus HOM05D001076 ORTHO05D005313 1.5e-41 174.9 177 56.5
SMO119G0028 Selaginella moellendorffii HOM05D001076 ORTHO05D005313 1.7e-40 171.4 239 61.1
Lj1A247T60 Lonicera japonica HOM05D001076 ORTHO05D005313 9.6e-28 129.0 137 81.8
Duzib168G1535 Durio zibethinus HOM05D001076 ORTHO05D005313 1.8e-26 124.8 113 61.1
arahy.Tifrunner.gnm1.ann1.AA7KSY Arachis hypogaea HOM05D001076 ORTHO05D002537 5.2e-26 123.2 73 80.8
MCO09G615 Micromonas commoda HOM05D001076 ORTHO05D005313 5.2e-26 123.2 88 61.4
arahy.Tifrunner.gnm1.ann1.S17AEX Arachis hypogaea HOM05D001076 ORTHO05D002537 1.4e-23 115.2 83 71.1
Cre10.g441200 Chlamydomonas reinhardtii HOM05D001076 ORTHO05D005313 1.9e-20 104.8 281 34.5
Lj1C272T10 Lonicera japonica HOM05D001076 ORTHO05D005313 3.6e-19 100.5 121 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5227 Anthoceros agrestis HOM05D001076 ORTHO05D005313 5.6e-12 76.6 128 69.5
Nitab4.5_0010831g0040 Nicotiana tabacum HOM05D001076 ORTHO05D005313 8.1e-11 72.8 58 65.5
MD11G1175800 Malus domestica HOM05D001076 ORTHO05D005313 1.4e-10 72.0 43 74.4
Rhsim13G0202000 Rhododendron simsii HOM05D001076 ORTHO05D005313 5.8e-09 66.6 59 59.3


User provided reference genes

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