Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 2407.1 1213 100.0
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 2387.8 1213 99.2
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1833.5 1211 76.5
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1832.4 1211 76.5
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1786.9 1205 75.4
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1704.9 1218 71.3
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1701.0 1214 72.0
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1687.2 1214 71.0
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1605.1 1209 67.5
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1596.3 1231 66.5
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1585.9 1218 66.5
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1558.1 1268 64.8
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1554.3 1231 65.4
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1550.0 1213 65.4
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1520.8 1221 64.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1503.0 1208 64.5
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1497.6 1220 63.2
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1484.5 1204 62.3
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1484.2 1220 62.9
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1481.8 1219 63.7
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1474.1 1206 61.9
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1473.4 1221 62.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1473.0 1212 62.1
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1470.3 1245 61.6
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1469.5 1221 62.2
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1460.7 1221 62.2
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1454.9 1215 60.7
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1451.8 1209 60.9
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1449.9 1212 61.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1445.6 1216 61.8
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1441.0 1221 60.3
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1432.9 1211 59.8
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1429.8 1205 59.8
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1427.2 1307 58.6
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1427.2 1211 59.9
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1426.8 1213 60.6
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1425.2 1224 60.7
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1417.5 1215 59.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1410.6 1211 59.6
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1395.9 1211 60.0
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1393.3 1223 58.4
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1390.9 1213 58.5
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1387.5 1207 59.3
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1381.3 1247 58.1
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1378.2 1209 58.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1367.8 1211 59.1
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1363.2 1202 59.6
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1359.4 1140 62.3
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1352.4 1209 58.1
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1352.0 1209 58.0
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1348.2 1209 57.8
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1347.4 1210 58.3
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1347.0 1209 57.3
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1342.0 1101 60.9
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1339.7 1204 57.9
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1337.4 1211 58.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1329.7 1247 56.1
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1322.0 1206 56.6
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1320.4 1208 57.5
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1319.3 1222 57.0
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1317.4 1209 56.6
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1315.4 1229 57.0
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1310.8 1215 56.4
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1308.1 1206 55.8
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1300.0 1233 55.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1292.3 1170 57.4
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1281.5 1157 58.8
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1273.5 1221 55.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1262.3 1199 55.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1256.1 895 71.4
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1234.6 1198 54.5
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1224.5 1202 54.6
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1220.3 1202 53.7
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1210.3 1202 53.2
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1205.3 1213 52.6
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1203.3 1214 52.5
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1194.1 1200 54.0
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1186.4 1199 52.6
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1179.1 1204 51.9
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1169.8 1204 52.2
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1149.8 1187 51.4
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1145.2 1197 51.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1143.6 1198 51.3
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1137.1 1199 51.0
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1136.3 1202 50.9
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1132.9 1203 51.5
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1132.1 1202 50.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1131.3 1188 51.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1130.5 1188 51.4
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1128.2 1203 51.1
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1125.5 1196 51.0
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1121.3 1194 51.3
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1117.1 1195 51.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1115.1 1195 51.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1114.0 1194 50.9
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1112.8 1248 49.6
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1085.5 1147 51.1
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 1.8e-304 1049.7 1190 49.1
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.6e-297 1025.4 1227 44.9
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 8.0e-297 1024.2 1109 50.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 5.7e-295 1018.1 1239 45.4
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 2.9e-267 926.0 1230 42.8
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 1.9e-266 923.3 1238 42.4
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 2.4e-216 756.9 1214 39.0
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 4.4e-186 656.4 1234 35.4
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.4e-184 650.6 1318 34.1
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 9.8e-170 602.1 1273 33.3
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.3e-153 548.5 1209 31.7
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 6.2e-108 396.7 433 47.3
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 5.5e-64 250.8 569 30.9
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-56 224.6 638 29.2
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.5e-53 216.1 218 45.4
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 1.2e-50 206.5 163 62.0
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.7e-50 205.3 218 45.0
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.5e-29 136.3 95 68.4
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 2.0e-29 136.0 209 32.5
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 3.6e-23 115.2 125 46.4
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.5e-21 109.8 177 33.9
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 4.6e-18 98.2 176 35.2
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.3e-12 80.1 64 53.1
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.1e-11 77.0 64 51.6
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.1e-08 67.0 205 27.8
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.2e-07 63.5 79 41.8
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 2.4e-06 59.3 82 42.7


User provided reference genes

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