Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 4.5e-74 281.2 142 100.0
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.0e-57 226.9 116 98.3
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 1.3e-57 226.5 126 91.3
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 2.9e-57 225.3 116 97.4
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 8.5e-57 223.8 116 95.7
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 8.5e-57 223.8 116 96.6
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.1e-56 223.4 116 95.7
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.4e-56 223.0 116 95.7
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.4e-56 223.0 117 95.7
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 1.4e-56 223.0 116 95.7
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 2.5e-56 222.2 116 95.7
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 2.5e-56 222.2 116 94.8
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 3.2e-56 221.9 116 94.8
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 3.2e-56 221.9 116 94.8
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 3.2e-56 221.9 116 94.8
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 96.6
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 96.6
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 4.2e-56 221.5 116 94.8
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 5.5e-56 221.1 116 94.8
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 5.5e-56 221.1 116 94.8
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 5.5e-56 221.1 116 94.8
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 7.2e-56 220.7 116 94.8
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 9.3e-56 220.3 116 94.8
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 9.3e-56 220.3 116 94.8
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 9.3e-56 220.3 116 94.8
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.2e-55 219.9 116 94.8
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 1.2e-55 219.9 116 94.0
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 1.2e-55 219.9 116 94.0
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 1.2e-55 219.9 116 94.0
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 1.2e-55 219.9 116 94.0
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.6e-55 219.5 116 94.8
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 2.1e-55 219.2 116 94.0
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 2.1e-55 219.2 116 94.0
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 2.1e-55 219.2 116 95.7
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 2.7e-55 218.8 116 93.1
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 2.7e-55 218.8 116 93.1
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 2.7e-55 218.8 116 94.0
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 94.0
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 3.6e-55 218.4 116 93.1
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 4.6e-55 218.0 139 82.0
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 4.6e-55 218.0 116 92.2
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 6.1e-55 217.6 116 92.2
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 7.9e-55 217.2 116 92.2
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 7.9e-55 217.2 116 94.8
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.0e-54 216.9 114 94.7
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 93.1
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.0e-54 216.9 116 92.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.3e-54 216.5 116 91.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.3e-54 216.5 116 92.2
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.3e-54 216.5 116 93.1
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 1.8e-54 216.1 116 93.1
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.8e-54 216.1 113 95.6
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.8e-54 216.1 116 92.2
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 2.3e-54 215.7 116 93.1
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 2.3e-54 215.7 116 92.2
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 2.3e-54 215.7 116 91.4
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 3.0e-54 215.3 116 92.2
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 3.0e-54 215.3 116 92.2
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 5.1e-54 214.5 114 93.9
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 5.1e-54 214.5 116 92.2
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 6.7e-54 214.2 116 92.2
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.1e-53 213.4 115 92.2
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 1.1e-53 213.4 114 91.2
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 1.1e-53 213.4 112 94.6
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.5e-53 213.0 115 91.3
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 1.5e-53 213.0 116 91.4
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 3.3e-53 211.8 117 90.6
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 3.3e-53 211.8 117 90.6
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 3.3e-53 211.8 116 93.1
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 4.3e-53 211.5 116 91.4
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 1.6e-52 209.5 114 91.2
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.6e-52 209.5 116 93.1
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 1.6e-52 209.5 116 90.5
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 2.2e-52 209.1 116 89.7
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 2.2e-52 209.1 116 89.7
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 2.2e-52 209.1 116 89.7
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 2.2e-52 209.1 116 89.7
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 2.2e-52 209.1 116 87.9
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 3.7e-52 208.4 114 91.2
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 3.7e-52 208.4 114 91.2
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 3.7e-52 208.4 116 88.8
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 3.7e-52 208.4 116 88.8
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 3.7e-52 208.4 116 88.8
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 4.8e-52 208.0 116 90.5
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 4.8e-52 208.0 110 91.8
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 6.3e-52 207.6 116 89.7
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 6.3e-52 207.6 116 89.7
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 6.3e-52 207.6 116 88.8
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 8.2e-52 207.2 116 88.8
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.1e-51 206.8 115 88.7
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 1.4e-51 206.5 116 87.9
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.4e-51 206.5 116 88.8
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 1.8e-51 206.1 116 88.8
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 4.1e-51 204.9 114 88.6
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 4.1e-51 204.9 114 88.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.9e-48 196.1 116 85.3
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 1.0e-46 190.3 116 81.9
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 4.8e-44 181.4 116 75.0
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 6.3e-44 181.0 130 73.8
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 3.1e-43 178.7 111 79.3
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 1.5e-42 176.4 127 67.7
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.0e-42 176.0 107 79.4
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 3.2e-40 168.7 97 86.6
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 9.4e-40 167.2 85 94.1
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 6.1e-39 164.5 93 83.9
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 9.4e-32 140.6 82 87.8
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 2.7e-31 139.0 109 58.7
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.5e-29 133.3 113 51.3
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 8.0e-23 110.9 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 4.8e-20 101.7 95 56.8
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 6.1e-15 84.7 42 92.9
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.4e-14 83.6 68 60.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 4.7e-07 58.5 81 37.0
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 4.7e-07 58.5 85 40.0
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 8.0e-07 57.8 31 83.9
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.0e-06 57.4 84 38.1
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 3.0e-06 55.8 83 33.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 3.0e-06 55.8 83 33.7
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.0e-06 55.5 102 35.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.0e-06 55.5 108 36.1
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 4.0e-06 55.5 64 45.3
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 4.0e-06 55.5 83 33.7
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 5.2e-06 55.1 86 36.0
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 6.8e-06 54.7 95 32.6
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 6.8e-06 54.7 95 32.6
Haze_04133 Corylus avellana HOM05D001413 ORTHO05D001385 6.8e-06 54.7 78 35.9
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 6.8e-06 54.7 75 34.7
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 8.9e-06 54.3 74 36.5
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.9e-06 54.3 125 31.2
Glyma.19G188700 Glycine max HOM05D000428 ORTHO05D000582 8.9e-06 54.3 85 36.5
Mapoly0007s0152 Marchantia polymorpha HOM05D003264 ORTHO05D003276 8.9e-06 54.3 83 34.9
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 8.9e-06 54.3 96 33.3
SGA_v2.0_scaffold146G36114 Striga asiatica HOM05D002411 ORTHO05D002564 8.9e-06 54.3 80 35.0


User provided reference genes

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