Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.3e-189 666.4 377 100.0
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 1.4e-151 540.0 382 80.1
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 3.9e-149 531.9 395 80.8
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 1.9e-148 529.6 383 80.4
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 2.3e-146 522.7 398 79.1
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 4.0e-146 521.9 381 79.3
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.5e-145 520.0 381 80.3
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.5e-145 520.0 390 79.7
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 9.8e-145 517.3 388 78.9
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 1.3e-144 516.9 398 79.4
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 3.7e-144 515.4 380 78.4
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.9e-143 513.1 385 78.2
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 9.2e-143 510.8 377 77.7
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 6.0e-142 508.1 388 77.6
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.0e-141 507.3 386 77.2
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 3.9e-141 505.4 388 77.3
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 8.6e-141 504.2 390 77.9
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 1.9e-140 503.1 385 77.9
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 9.5e-140 500.7 392 76.8
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.1e-139 499.6 401 74.6
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 2.8e-139 499.2 377 76.9
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 3.6e-139 498.8 381 75.9
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 4.7e-139 498.4 396 76.0
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 1.4e-138 496.9 392 76.3
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 5.2e-138 495.0 388 76.5
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 3.4e-137 492.3 389 77.1
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 4.4e-137 491.9 388 77.1
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 5.8e-137 491.5 400 73.8
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 9.8e-137 490.7 374 76.5
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 9.8e-137 490.7 393 76.1
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 1.3e-136 490.3 385 76.1
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 1.7e-136 490.0 379 76.8
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 2.2e-136 489.6 383 77.5
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 4.9e-136 488.4 389 77.4
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 6.4e-136 488.0 384 76.6
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 3.2e-135 485.7 386 75.4
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.6e-134 483.4 397 73.8
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 2.1e-134 483.0 397 74.1
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 7.8e-134 481.1 380 76.1
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 7.8e-134 481.1 378 74.3
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 3.9e-133 478.8 454 65.6
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.9e-132 476.5 386 73.6
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 9.5e-132 474.2 386 66.1
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 3.6e-131 472.2 395 73.9
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 8.1e-131 471.1 389 73.8
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 8.9e-130 467.6 391 72.4
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 1.5e-129 466.8 396 73.0
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 5.8e-129 464.9 377 72.7
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 5.8e-129 464.9 383 73.4
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.7e-128 463.4 382 76.7
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 2.9e-128 462.6 376 72.6
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 4.9e-128 461.8 385 73.5
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 6.4e-128 461.5 381 71.9
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 4.1e-127 458.8 394 72.3
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 7.1e-127 458.0 396 72.0
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 9.2e-127 457.6 391 69.6
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 2.1e-126 456.4 389 74.0
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.7e-126 456.1 377 72.9
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 6.0e-126 454.9 385 66.0
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.7e-125 453.4 392 74.0
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 1.5e-124 450.3 371 69.5
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 1.5e-124 450.3 404 67.3
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 2.5e-124 449.5 396 71.5
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 4.3e-124 448.7 404 71.5
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 4.3e-124 448.7 404 67.1
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 5.6e-124 448.4 385 67.8
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 7.3e-124 448.0 377 71.1
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 3.6e-123 445.7 386 72.3
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 8.9e-122 441.0 385 67.0
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.2e-121 440.7 404 67.8
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.7e-120 436.8 328 76.8
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 1.1e-119 434.1 439 63.3
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 4.6e-118 428.7 376 67.6
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 3.9e-117 425.6 393 70.2
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 8.7e-117 424.5 411 62.5
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 2.5e-116 422.9 400 67.5
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 3.3e-116 422.5 403 68.2
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 9.6e-116 421.0 393 66.7
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.4e-114 417.2 386 69.9
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 6.9e-114 414.8 398 67.3
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 4.4e-113 412.1 390 66.7
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 5.8e-113 411.8 402 66.9
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 1.1e-111 407.5 404 66.6
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 1.1e-111 407.5 398 67.1
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 2.5e-108 396.4 394 67.3
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 9.6e-108 394.4 376 64.9
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 1.3e-107 394.0 397 62.2
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 2.1e-107 393.3 377 65.8
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 2.1e-107 393.3 377 65.8
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 1.1e-106 391.0 376 64.6
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 3.4e-105 386.0 352 60.8
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 3.4e-105 386.0 384 65.4
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 7.6e-105 384.8 392 65.6
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 1.7e-104 383.6 390 66.2
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 2.2e-104 383.3 296 72.3
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 3.8e-104 382.5 450 57.3
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 1.1e-103 380.9 391 63.9
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 3.9e-101 372.5 387 63.6
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 5.6e-100 368.6 393 63.6
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 3.7e-99 365.9 432 58.3
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 1.7e-96 357.1 293 78.2
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 1.5e-92 344.0 384 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 8.5e-88 328.2 427 47.8
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 1.4e-87 327.4 278 77.7
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 6.7e-85 318.5 169 91.1
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 5.7e-84 315.5 293 74.1
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 1.3e-83 314.3 468 51.9
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 8.2e-83 311.6 185 83.2
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 1.1e-82 311.2 373 56.3
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 3.1e-82 309.7 212 75.9
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 2.6e-81 306.6 290 62.4
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 5.1e-77 292.4 375 53.6
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 1.2e-73 281.2 171 81.3
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 1.2e-73 281.2 171 81.3
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 1.2e-73 281.2 171 81.3
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 7.9e-70 268.5 389 51.4
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.7e-67 260.8 150 84.7
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 8.2e-67 258.5 169 80.5
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 1.1e-66 258.1 383 44.1
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 4.1e-66 256.1 299 55.5
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 4.8e-59 232.6 143 80.4
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 2.3e-45 187.2 339 41.6
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 6.8e-45 185.7 128 71.9
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 4.4e-44 183.0 497 35.8
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.4e-42 177.9 97 85.6
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 4.5e-41 172.9 259 47.9
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 1.3e-40 171.4 175 52.0
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 5.0e-40 169.5 97 82.5
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 1.2e-38 164.9 189 67.7
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 1.6e-38 164.5 97 76.3
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 2.7e-33 147.1 101 70.3
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 1.5e-23 114.8 183 41.0
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.7e-19 101.3 71 76.1
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 8.3e-19 99.0 105 44.8
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 2.4e-18 97.4 119 52.1
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 1.6e-17 94.7 97 49.5
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 6.0e-17 92.8 208 45.2
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 2.6e-12 77.4 120 49.2
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 7.6e-12 75.9 119 48.7
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 2.7e-09 67.4 135 31.1
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 4.6e-09 66.6 104 36.5
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 6.0e-09 66.2 105 34.3
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 1.0e-08 65.5 106 35.8
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 6.6e-08 62.8 100 35.0
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 6.6e-08 62.8 103 29.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 6.6e-08 62.8 103 29.1
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 8.6e-08 62.4 104 32.7
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 8.6e-08 62.4 103 30.1
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 8.6e-08 62.4 102 34.3
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 1.1e-07 62.0 103 30.1
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 1.1e-07 62.0 103 29.1
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 1.5e-07 61.6 100 34.0
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 1.5e-07 61.6 101 34.7
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 1.9e-07 61.2 107 33.6
BcaB08g37174 Brassica carinata HOM05D002097 ORTHO05D002248 2.5e-07 60.8 119 29.4
Dinv20611 Davidia involucrata HOM05D001563 ORTHO05D001956 3.3e-07 60.5 100 31.0
Psat0s2394g0080 Pisum sativum HOM05D001563 ORTHO05D001956 3.3e-07 60.5 100 33.0
TPR.G34178 Trifolium pratense HOM05D001563 ORTHO05D001956 4.3e-07 60.1 100 33.0
Lj4A198G29 Lonicera japonica HOM05D001563 ORTHO05D001956 5.6e-07 59.7 100 33.0
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 7.3e-07 59.3 102 34.3
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 1.2e-06 58.5 100 30.0
Medtr4g031680 Medicago truncatula HOM05D001563 ORTHO05D001956 1.2e-06 58.5 100 32.0
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 1.6e-06 58.2 103 31.1
Lalb_Chr01g0000001 Lupinus albus HOM05D001563 ORTHO05D001956 1.6e-06 58.2 101 31.7
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 1.6e-06 58.2 112 36.6
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.6e-06 58.2 101 31.7
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 1.6e-06 58.2 100 30.0
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 1.6e-06 58.2 129 27.1
TAR628G1301 Trochodendron aralioides HOM05D001563 ORTHO05D001956 1.6e-06 58.2 101 33.7
Zm00001eb222690 Zea mays HOM05D002097 ORTHO05D002248 2.1e-06 57.8 99 31.3
arahy.Tifrunner.gnm1.ann1.D340KN Arachis hypogaea HOM05D002097 ORTHO05D002248 2.8e-06 57.4 104 27.9
MSTRG.19982 Avicennia marina HOM05D002097 ORTHO05D002248 2.8e-06 57.4 109 29.4
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 2.8e-06 57.4 95 31.6
arahy.Tifrunner.gnm1.ann1.272FN3 Arachis hypogaea HOM05D001563 ORTHO05D001956 3.6e-06 57.0 143 28.7
FvH4_3g04890 Fragaria vesca HOM05D001563 ORTHO05D001956 3.6e-06 57.0 101 27.7
TPR.G25537 Trifolium pratense HOM05D001563 ORTHO05D001956 3.6e-06 57.0 142 27.5
Aqoxy6G01047 Aquilegia oxysepala HOM05D001563 ORTHO05D001956 4.7e-06 56.6 101 34.7
EL10Ac6g14918 Beta vulgaris HOM05D001563 ORTHO05D001956 4.7e-06 56.6 103 29.1
MD05G1123800 Malus domestica HOM05D002097 ORTHO05D002248 4.7e-06 56.6 104 30.8
Medtr3g005670 Medicago truncatula HOM05D001563 ORTHO05D001956 4.7e-06 56.6 142 27.5
Phvul.005G001300 Phaseolus vulgaris HOM05D001563 ORTHO05D001956 4.7e-06 56.6 142 26.8
Manes.04G071600 Manihot esculenta HOM05D002097 ORTHO05D002248 6.2e-06 56.2 128 25.8
Os11g0636900 Oryza sativa ssp. japonica HOM05D001563 ORTHO05D001956 6.2e-06 56.2 143 25.2
Atru.chr3.546 Acer truncatum HOM05D001563 ORTHO05D001956 8.1e-06 55.8 100 31.0
COL.COLO4_17145 Corchorus olitorius HOM05D001563 ORTHO05D001956 8.1e-06 55.8 103 29.1
Glyma.04G255700 Glycine max HOM05D001563 ORTHO05D001956 8.1e-06 55.8 142 26.8


User provided reference genes

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