Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 8.4e-105 383.6 186 100.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 1.8e-78 296.2 147 95.9
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 5.0e-65 251.5 148 79.1
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 8.5e-65 250.8 148 79.1
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 8.5e-65 250.8 148 79.1
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 5.5e-64 248.1 148 77.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 9.4e-64 247.3 148 78.4
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 1.2e-63 246.9 183 66.1
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 1.6e-63 246.5 148 78.4
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.1e-63 246.1 148 77.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 2.1e-63 246.1 183 65.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 2.1e-63 246.1 183 65.6
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 2.1e-63 246.1 148 75.7
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.7e-63 245.7 148 77.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.6e-63 245.4 148 76.4
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 4.6e-63 245.0 148 75.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 4.6e-63 245.0 148 76.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 6.1e-63 244.6 148 75.7
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 7.9e-63 244.2 148 75.7
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 7.9e-63 244.2 148 76.4
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 7.9e-63 244.2 148 78.4
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 1.0e-62 243.8 148 77.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 1.0e-62 243.8 148 77.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 1.0e-62 243.8 150 74.7
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-62 243.4 148 75.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 1.4e-62 243.4 148 76.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 1.4e-62 243.4 148 76.4
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 1.8e-62 243.0 183 65.0
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.8e-62 243.0 148 73.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 2.3e-62 242.7 148 77.0
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 2.3e-62 242.7 148 73.6
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 3.0e-62 242.3 148 76.4
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 3.9e-62 241.9 148 76.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 5.1e-62 241.5 148 77.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 5.1e-62 241.5 148 73.6
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 5.1e-62 241.5 148 74.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 6.7e-62 241.1 147 76.9
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 6.7e-62 241.1 148 74.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 8.8e-62 240.7 184 64.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.1e-61 240.4 148 76.4
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 1.5e-61 240.0 148 77.7
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.5e-61 240.0 148 77.0
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.0e-61 239.6 147 76.2
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 2.0e-61 239.6 147 76.2
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 2.0e-61 239.6 148 73.0
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 3.3e-61 238.8 147 76.2
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 3.3e-61 238.8 148 72.3
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 3.3e-61 238.8 148 72.3
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 4.3e-61 238.4 148 73.6
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 5.7e-61 238.0 148 75.7
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 7.4e-61 237.7 148 73.6
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 7.4e-61 237.7 149 72.5
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 7.4e-61 237.7 148 72.3
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.3e-60 236.9 147 74.1
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 2.2e-60 236.1 148 73.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 2.8e-60 235.7 148 74.3
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 4.8e-60 235.0 148 73.0
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 4.8e-60 235.0 148 73.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 6.3e-60 234.6 147 74.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.1e-59 233.8 148 72.3
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.4e-59 233.4 148 71.6
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 1.4e-59 233.4 148 72.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.4e-59 233.4 148 72.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 2.4e-59 232.6 147 72.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.4e-59 232.6 148 72.3
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.4e-59 232.6 148 72.3
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 2.4e-59 232.6 148 72.3
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 4.1e-59 231.9 148 72.3
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 4.1e-59 231.9 148 73.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 9.1e-59 230.7 148 72.3
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 1.2e-58 230.3 148 71.6
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 1.2e-58 230.3 148 73.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 2.0e-58 229.6 148 70.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 2.6e-58 229.2 148 69.6
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.6e-58 229.2 148 73.0
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 3.4e-58 228.8 148 70.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-58 228.8 148 70.3
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-58 228.8 148 70.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 1.0e-57 227.3 148 69.6
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 1.0e-57 227.3 148 70.3
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 2.9e-57 225.7 148 69.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 5.0e-57 224.9 148 68.2
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 5.0e-57 224.9 148 69.6
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 6.5e-57 224.6 148 68.9
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 6.5e-57 224.6 148 68.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 8.5e-57 224.2 148 68.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.5e-57 224.2 148 70.9
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.1e-56 223.8 148 72.3
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 1.4e-56 223.4 148 72.3
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 1.4e-56 223.4 146 71.2
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.9e-56 223.0 148 71.6
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 3.2e-56 222.2 148 69.6
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 3.2e-56 222.2 148 68.9
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 5.5e-56 221.5 146 71.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 7.2e-56 221.1 146 69.9
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 7.2e-56 221.1 146 69.9
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 7.2e-56 221.1 146 69.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 7.2e-56 221.1 146 69.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 9.4e-56 220.7 148 68.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 9.4e-56 220.7 148 68.9
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 9.4e-56 220.7 150 72.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 9.4e-56 220.7 143 70.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 9.4e-56 220.7 148 70.9
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 1.2e-55 220.3 150 72.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 2.1e-55 219.5 147 70.1
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 2.1e-55 219.5 145 71.7
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 2.7e-55 219.2 150 72.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.4e-54 216.9 143 71.3
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 1.4e-54 216.9 148 66.9
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 5.1e-54 214.9 134 73.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 6.7e-54 214.5 149 65.1
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 8.8e-54 214.2 146 69.2
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 4.4e-53 211.8 146 68.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 2.2e-52 209.5 148 67.6
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.3e-52 208.0 148 68.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.2e-52 207.6 148 68.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 2.4e-51 206.1 149 67.1
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 9.1e-51 204.1 148 68.2
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 1.2e-50 203.8 149 61.1
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 1.5e-50 203.4 185 55.7
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.2e-49 199.5 204 53.4
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 2.9e-49 199.1 148 64.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 3.2e-48 195.7 149 63.8
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.7e-39 166.0 138 60.1
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 6.1e-39 164.9 138 57.2
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 6.7e-38 161.4 155 51.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 5.7e-37 158.3 147 50.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.8e-36 156.0 153 49.0
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 4.1e-35 152.1 138 54.3
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.2e-34 150.6 83 78.3
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 3.7e-28 129.0 191 38.7
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.2e-26 124.0 135 44.4
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.9e-20 102.1 126 42.9
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 6.1e-15 85.1 53 73.6
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.7e-12 77.0 50 74.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.4e-11 73.9 98 38.8
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 7.8e-10 68.2 56 60.7
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.3e-09 67.4 45 62.2
DCAR_003305 Daucus carota HOM05D003567 ORTHO05D004117 1.8e-06 57.0 31 77.4


User provided reference genes

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