Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 2233.4 1194 100.0
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1795.8 1197 81.2
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1781.1 1232 78.7
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1750.3 1198 79.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1740.3 1199 78.7
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1738.4 1208 77.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1733.8 1199 79.3
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1729.9 1211 77.3
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1726.1 1196 78.8
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1726.1 1198 78.5
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1721.8 1198 78.0
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1714.1 1212 76.7
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1713.4 1207 76.8
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1200 77.2
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1708.0 1198 78.2
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1707.6 1196 77.8
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1706.4 1197 76.9
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1706.4 1138 81.5
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1706.4 1217 76.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1704.9 1168 77.9
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1197 77.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1701.0 1201 77.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1699.1 1219 76.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1697.9 1203 75.8
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1697.9 1207 76.1
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1696.8 1188 76.4
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1693.7 1197 77.4
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1693.3 1205 75.8
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1692.6 1203 75.8
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1687.2 1200 75.4
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1680.2 1197 75.1
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1678.7 1199 76.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1677.1 1230 75.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1674.1 1201 75.8
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1673.3 1197 77.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1671.8 1262 73.7
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1670.2 1201 76.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1670.2 1197 76.6
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1202 75.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1206 75.0
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1666.4 1200 75.2
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1664.8 1198 76.0
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1664.8 1197 74.9
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1658.7 1199 75.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1658.3 1181 75.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1657.1 1217 75.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1655.2 1220 74.8
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1652.1 1200 73.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1647.5 1217 73.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1647.1 1213 75.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1646.7 1253 73.1
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1645.6 1197 74.4
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1642.5 1209 73.0
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1642.1 1234 72.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1640.6 1206 75.5
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1634.8 1172 76.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1215 74.2
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1197 74.5
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1619.0 1198 74.0
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1614.7 1205 74.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1612.4 1186 74.5
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1610.5 1194 74.4
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1608.6 1168 75.7
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1607.4 1223 71.6
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1598.9 1161 75.3
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1592.8 1174 74.0
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1302 69.0
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1587.8 1204 71.6
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1585.1 1200 71.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1561.6 1186 72.1
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1554.3 1219 71.4
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1550.8 1386 64.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1548.5 1108 75.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1545.8 1065 79.0
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1543.5 1204 71.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1531.9 1229 68.8
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1526.9 1197 68.4
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1526.9 1197 68.4
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1523.5 1200 68.5
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1522.3 1208 69.6
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1520.8 1199 69.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1519.6 1199 68.2
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1514.6 1187 70.6
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1503.4 1202 68.3
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1503.0 1195 70.3
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1500.7 1211 69.4
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1499.6 1187 70.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1498.4 1203 69.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1494.9 1206 69.1
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1492.6 1195 69.2
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1491.5 1210 68.8
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1490.3 1201 68.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1484.2 1172 70.6
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1478.0 1200 69.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1473.8 1194 67.8
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1461.4 1182 69.0
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1404.0 1221 65.3
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1397.9 1261 64.3
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1367.1 931 79.2
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1365.9 1216 63.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1362.1 873 82.1
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1357.4 1205 63.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1354.0 879 79.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1213.7 838 75.9
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1212.6 790 81.6
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1170.6 1231 54.0
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1123.2 887 73.5
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1120.5 761 79.6
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1085.9 787 72.0
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.2e-300 1036.9 666 80.6
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.3e-288 996.1 924 64.6
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 9.9e-284 980.7 969 60.1
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.4e-283 977.6 741 71.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.0e-215 753.8 610 68.0
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-191 674.5 530 65.3
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 4.0e-176 623.2 411 76.6
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.2e-165 587.0 1275 35.8
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.3e-158 565.1 442 70.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.7e-158 564.7 378 78.0
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.5e-154 550.8 294 91.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 2.3e-131 474.6 1168 33.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 5.3e-128 463.4 309 76.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 2.8e-121 441.0 237 89.9
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.8e-120 438.3 366 69.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 4.8e-113 413.7 831 37.8
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.0e-110 403.7 314 70.7
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.8e-96 358.6 554 43.5
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 5.2e-91 340.5 1269 27.1
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 3.7e-89 334.3 212 76.9
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-88 331.3 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-88 331.3 181 86.2
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.7e-87 328.2 174 90.8
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.6e-84 318.9 332 59.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.8e-82 310.5 215 73.5
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 7.5e-82 310.1 224 71.0
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.9e-81 308.1 215 73.0
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 5.2e-75 287.3 384 51.8
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.3e-70 271.9 365 53.4
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.0e-67 260.0 339 53.4
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 9.9e-66 256.5 202 65.8
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.1e-59 235.0 315 45.1
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 5.8e-58 230.7 173 71.7
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.9e-58 229.9 164 72.0
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.8e-57 228.0 131 87.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.8e-54 219.2 154 73.4
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.9e-49 201.1 138 70.3
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 8.4e-49 200.3 325 40.3
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.9e-45 189.1 163 66.3
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.6e-39 169.5 120 69.2
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 3.5e-39 168.3 232 48.7
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.7e-37 161.0 96 81.2
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 6.9e-35 154.1 83 89.2
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 7.2e-32 144.1 77 89.6
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.6e-31 142.9 99 70.7
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 7.9e-31 140.6 134 59.0
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.1e-29 136.7 103 73.8
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 2.4e-27 129.0 213 43.2
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 3.4e-26 125.2 87 69.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.9e-26 124.4 77 80.5
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.2e-25 122.5 119 66.4
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-24 120.2 113 63.7
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 6.1e-23 114.4 83 63.9
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 5.1e-22 111.3 65 86.2
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.0e-21 109.4 72 76.4
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.4e-19 102.4 97 63.9
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 3.4e-18 98.6 69 66.7
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.0e-17 97.1 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.7e-17 96.3 57 75.4
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-17 94.4 57 78.9
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 3.2e-16 92.0 59 83.1
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 6.3e-12 77.8 119 43.7
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.4e-11 75.9 56 64.3
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 9.1e-11 73.9 437 27.7
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 2.6e-10 72.4 43 86.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 4.2e-08 65.1 42 71.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 1.6e-07 63.2 47 55.3
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 4.7e-07 61.6 153 35.3
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 3.0e-06 58.9 96 45.8


User provided reference genes

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