Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 3.1e-110 402.9 435 100.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 2.8e-34 150.6 88 85.2
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.6e-34 150.2 88 84.1
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 3.6e-34 150.2 88 84.1
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 8.1e-34 149.1 88 83.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.1e-33 148.7 88 83.0
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.4e-33 148.3 88 81.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 1.4e-33 148.3 87 83.9
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 1.8e-33 147.9 88 83.0
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 1.8e-33 147.9 88 85.2
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 1.8e-33 147.9 88 81.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.8e-33 147.9 88 81.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.8e-33 147.9 87 83.9
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 1.8e-33 147.9 88 83.0
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 2.4e-33 147.5 88 84.1
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 3.1e-33 147.1 87 82.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 3.1e-33 147.1 88 83.0
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 4.0e-33 146.7 88 84.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 5.3e-33 146.4 88 80.7
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 5.3e-33 146.4 88 81.8
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.9e-33 146.0 88 81.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 6.9e-33 146.0 88 81.8
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 6.9e-33 146.0 88 80.7
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 9.0e-33 145.6 88 81.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 9.0e-33 145.6 88 81.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 9.0e-33 145.6 88 80.7
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 9.0e-33 145.6 88 80.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 9.0e-33 145.6 88 80.7
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 1.2e-32 145.2 88 81.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.2e-32 145.2 88 80.7
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.2e-32 145.2 88 80.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.5e-32 144.8 88 81.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 1.5e-32 144.8 88 80.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 1.5e-32 144.8 88 80.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 1.5e-32 144.8 88 79.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 2.0e-32 144.4 114 68.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 2.0e-32 144.4 88 80.7
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 2.0e-32 144.4 88 80.7
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 2.6e-32 144.1 88 81.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 2.6e-32 144.1 88 80.7
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.6e-32 144.1 88 80.7
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 79.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 79.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 80.7
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 79.5
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 78.4
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 80.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 3.4e-32 143.7 88 79.5
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 4.4e-32 143.3 88 79.5
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.4e-32 143.3 88 80.7
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.4e-32 143.3 88 79.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 5.8e-32 142.9 88 80.7
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 5.8e-32 142.9 88 79.5
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 5.8e-32 142.9 88 79.5
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.6e-32 142.5 88 78.4
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.6e-32 142.5 88 78.4
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 7.6e-32 142.5 88 80.7
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 7.6e-32 142.5 88 80.7
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 9.9e-32 142.1 88 80.7
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 9.9e-32 142.1 88 79.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 9.9e-32 142.1 88 79.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 9.9e-32 142.1 88 79.5
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 78.4
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 80.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 78.4
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 78.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 1.3e-31 141.7 88 79.5
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.2e-31 141.0 88 77.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 2.9e-31 140.6 88 79.5
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 2.9e-31 140.6 88 79.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 3.8e-31 140.2 88 78.4
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 4.9e-31 139.8 88 77.3
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.9e-31 139.8 88 78.4
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 4.9e-31 139.8 88 80.7
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 6.4e-31 139.4 88 78.4
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 6.4e-31 139.4 88 78.4
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 6.4e-31 139.4 88 78.4
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 1.9e-30 137.9 88 77.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 1.9e-30 137.9 88 77.3
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 1.9e-30 137.9 88 77.3
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 1.9e-30 137.9 88 77.3
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 2.4e-30 137.5 88 77.3
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 2.4e-30 137.5 88 76.1
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 4.2e-30 136.7 88 77.3
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 5.4e-30 136.3 88 77.3
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.4e-30 136.3 88 77.3
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 5.4e-30 136.3 88 77.3
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 5.4e-30 136.3 88 75.0
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 7.1e-30 136.0 88 78.4
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 9.3e-30 135.6 88 77.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 9.3e-30 135.6 88 77.3
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 1.6e-29 134.8 88 75.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.6e-29 134.8 84 79.8
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 1.6e-29 134.8 87 78.2
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 2.7e-29 134.0 88 73.9
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.5e-29 133.7 88 75.0
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 3.5e-29 133.7 88 75.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 3.5e-29 133.7 88 75.0
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 3.5e-29 133.7 88 73.9
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 6.0e-29 132.9 88 75.0
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 6.0e-29 132.9 88 75.0
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 6.0e-29 132.9 88 77.3
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 1.0e-28 132.1 88 73.9
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.3e-28 131.7 88 73.9
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.3e-28 131.7 88 75.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 1.7e-28 131.3 88 76.1
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 1.7e-28 131.3 88 75.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 2.3e-28 131.0 87 75.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.0e-28 130.6 88 75.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.9e-28 130.2 88 73.9
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 6.6e-28 129.4 87 74.7
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 6.6e-28 129.4 84 77.4
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 8.7e-28 129.0 88 69.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 8.7e-28 129.0 88 70.5
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 1.1e-25 122.1 88 67.0
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.6e-24 117.5 117 57.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 1.4e-22 111.7 88 63.6
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 7.1e-22 109.4 88 60.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 2.3e-20 104.4 88 58.0
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 8.7e-20 102.4 88 58.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 1.1e-19 102.1 88 56.8
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.1e-18 97.8 88 56.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 6.2e-18 96.3 88 52.3
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.1e-17 95.5 88 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 7.6e-16 89.4 87 49.4
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.2e-14 83.6 56 76.8
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.0e-13 79.7 57 68.4
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.5e-11 75.1 89 46.1
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 7.4e-11 72.8 70 50.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.5e-08 65.1 78 43.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.9e-07 60.8 91 39.6
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.1e-06 58.9 73 39.7


User provided reference genes

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