Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1914.8 972 100.0
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 984 80.1
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 981 78.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 984 80.5
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 980 80.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 934 80.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1528.5 980 78.7
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 979 79.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 943 78.8
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1520.4 935 80.2
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1516.9 984 78.5
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 976 79.8
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 981 78.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 996 78.0
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1510.4 979 77.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 934 78.8
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 984 77.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 942 78.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 942 78.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1496.5 982 77.9
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 981 77.0
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1493.8 977 77.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 934 77.9
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1491.9 981 76.8
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1490.3 982 77.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 981 77.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 978 77.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1486.5 939 77.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 980 77.1
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1484.2 1007 75.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1483.8 939 76.8
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 985 76.0
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1483.0 979 76.7
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1483.0 940 77.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 975 76.9
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 981 76.7
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1481.5 979 77.3
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1481.5 976 76.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1480.3 939 76.6
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1479.5 939 76.5
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1479.5 983 77.5
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 977 75.9
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 982 77.7
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1477.6 979 76.0
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 988 76.6
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 939 76.4
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1476.1 976 76.1
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 944 76.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 979 76.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 982 76.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 986 77.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1472.6 990 76.6
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 981 75.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1470.7 982 76.7
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 981 76.1
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 978 76.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 982 76.2
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 979 76.4
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1466.8 980 75.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 977 75.6
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 938 76.7
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 979 76.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 975 75.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 974 76.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 978 76.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 974 75.6
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 972 76.0
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 941 75.9
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 986 76.0
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 975 74.2
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 976 75.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 984 74.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 987 74.7
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1432.9 1204 64.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 980 74.8
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1426.8 988 74.2
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 983 73.8
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 979 74.9
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 975 73.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 977 74.0
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 852 81.2
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 986 72.8
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1398.3 986 72.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1397.5 942 73.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1397.1 927 77.9
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 1005 70.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1388.2 996 71.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 1003 71.3
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1380.2 990 71.8
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1377.5 1009 70.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1377.5 1009 70.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1373.6 866 77.9
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1369.4 992 70.9
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1367.4 976 71.8
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1366.7 977 69.9
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1365.5 998 70.6
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1365.1 1002 70.7
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1362.1 992 70.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1359.7 943 71.6
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1359.0 944 71.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1358.6 977 70.2
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1354.7 985 68.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1341.6 974 68.7
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1326.6 976 68.6
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1326.6 944 71.4
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1322.0 942 70.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1314.3 929 68.9
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1312.7 996 70.3
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1295.4 916 71.1
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1280.4 809 79.5
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1269.6 945 65.9
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1237.6 807 77.9
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1216.8 945 64.3
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1206.8 749 80.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1146.7 710 81.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1131.3 803 68.9
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1113.2 1007 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1108.2 1002 56.7
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1102.4 971 60.4
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1080.1 979 57.7
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.1e-299 1031.9 739 72.8
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.6e-276 956.4 682 72.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.8e-271 937.6 806 57.3
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.8e-260 902.5 695 69.6
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.2e-256 888.6 612 74.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.8e-249 865.5 572 74.1
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.2e-232 809.3 522 76.4
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.4e-222 777.3 599 66.6
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.1e-211 741.1 486 74.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 6.1e-199 698.7 418 80.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.3e-182 643.7 384 81.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.7e-172 609.8 431 74.9
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 4.1e-171 606.3 1056 36.6
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.8e-143 513.1 413 62.0
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.4e-142 510.8 843 37.1
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 9.0e-142 508.8 438 59.4
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.1e-115 422.2 253 79.8
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 1.2e-114 418.7 462 52.8
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 9.4e-107 392.5 246 78.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 3.6e-106 390.6 1052 28.0
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.6e-98 364.0 279 64.5
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.0e-97 360.9 249 68.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-95 355.5 857 30.8
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 9.2e-86 322.8 253 62.5
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 9.2e-86 322.8 253 62.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 3.5e-85 320.9 388 43.3
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 5.4e-78 297.0 294 55.4
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 2.7e-61 241.5 183 66.1
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.7e-50 204.1 169 52.1
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-48 199.1 247 48.2
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 9.3e-46 189.9 169 55.0
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.1e-43 183.0 159 56.6
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.1e-43 183.0 159 56.6
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 4.0e-41 174.5 139 59.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.6e-40 170.2 118 70.3
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 7.6e-40 170.2 221 47.1
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 2.2e-39 168.7 141 51.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 7.1e-38 163.7 111 71.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.1e-37 162.2 99 75.8
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.5e-35 156.0 121 63.6
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.5e-35 155.2 177 50.3
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-33 149.8 88 85.2
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 9.0e-33 146.7 94 76.6
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 9.9e-32 143.3 144 50.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.4e-31 140.6 97 62.9
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 7.9e-29 133.7 99 66.7
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.3e-28 132.1 99 65.7
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.9e-28 131.3 125 52.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.7e-28 130.6 98 66.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.3e-27 128.3 99 63.6
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.6e-27 126.7 101 62.4
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.1e-26 125.6 97 64.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.6e-24 118.6 65 86.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.4e-22 112.8 130 49.2
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.9e-20 104.8 278 32.7
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 9.6e-19 100.1 275 26.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.5e-14 85.5 82 54.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.6e-13 81.6 132 40.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.3e-12 79.0 56 66.1
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.8e-09 69.3 46 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.1e-06 60.1 45 60.0
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.1e-06 60.1 88 42.0


User provided reference genes

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