Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 2.4e-69 265.4 132 100.0
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 4.8e-54 214.5 133 77.4
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 3.1e-53 211.8 134 78.4
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 6.9e-53 210.7 134 75.4
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.2e-52 209.9 133 76.7
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 2.0e-52 209.1 133 75.2
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 2.6e-52 208.8 134 74.6
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 3.4e-52 208.4 134 74.6
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 5.8e-52 207.6 131 77.9
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 7.6e-52 207.2 125 76.8
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 9.9e-52 206.8 133 73.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 2.2e-51 205.7 115 82.6
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 2.2e-51 205.7 133 75.2
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 2.9e-51 205.3 130 76.2
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 2.9e-51 205.3 134 71.6
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 3.8e-51 204.9 115 81.7
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 3.8e-51 204.9 133 73.7
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 8.4e-51 203.8 133 72.9
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 4.2e-50 201.4 133 73.7
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 1.2e-49 199.9 133 73.7
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.2e-49 199.9 116 79.3
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 1.6e-49 199.5 133 72.9
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 1.6e-49 199.5 132 73.5
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.1e-49 199.1 115 78.3
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 2.1e-49 199.1 132 72.0
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 3.5e-49 198.4 115 77.4
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 3.5e-49 198.4 112 80.4
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 3.5e-49 198.4 116 81.9
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 4.6e-49 198.0 115 76.5
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 4.6e-49 198.0 115 76.5
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 4.6e-49 198.0 115 77.4
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 4.6e-49 198.0 133 71.4
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 6.0e-49 197.6 133 71.4
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 6.0e-49 197.6 116 81.9
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 7.9e-49 197.2 129 72.1
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.0e-48 196.8 130 73.8
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 1.0e-48 196.8 115 78.3
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.3e-48 196.4 133 70.7
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.3e-48 196.4 133 70.7
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 1.3e-48 196.4 134 67.9
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.8e-48 196.1 115 77.4
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 2.3e-48 195.7 115 80.9
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 2.3e-48 195.7 115 80.9
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 2.3e-48 195.7 116 81.0
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 3.9e-48 194.9 115 76.5
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 5.1e-48 194.5 115 78.3
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 5.1e-48 194.5 133 72.2
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 5.1e-48 194.5 115 73.0
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 8.7e-48 193.7 131 68.7
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 1.5e-47 193.0 115 75.7
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 1.9e-47 192.6 116 75.9
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 2.5e-47 192.2 120 74.2
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 2.5e-47 192.2 115 77.4
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 3.3e-47 191.8 115 75.7
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 3.3e-47 191.8 127 73.2
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 4.3e-47 191.4 115 77.4
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 4.3e-47 191.4 127 72.4
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 5.6e-47 191.0 127 70.9
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.6e-47 191.0 133 69.9
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 7.4e-47 190.7 115 74.8
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 9.6e-47 190.3 115 77.4
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 1.6e-46 189.5 130 67.7
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 1.6e-46 189.5 115 76.5
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.6e-46 189.5 124 71.8
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 2.1e-46 189.1 128 66.4
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 4.8e-46 188.0 115 75.7
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 4.8e-46 188.0 115 74.8
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 6.2e-46 187.6 115 75.7
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 6.2e-46 187.6 115 75.7
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 6.2e-46 187.6 115 75.7
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 1.1e-45 186.8 115 75.7
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.4e-45 186.4 115 75.7
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.4e-45 186.4 121 71.9
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.8e-45 186.0 115 74.8
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 2.4e-45 185.7 128 70.3
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 2.4e-45 185.7 119 73.1
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.4e-45 185.7 119 73.1
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.4e-45 185.7 119 73.1
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.4e-45 185.7 119 73.1
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 2.4e-45 185.7 127 70.1
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 4.0e-45 184.9 127 70.1
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.3e-45 184.5 119 72.3
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 5.3e-45 184.5 116 74.1
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 5.3e-45 184.5 116 74.1
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 6.9e-45 184.1 115 75.7
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 1.2e-44 183.3 115 74.8
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 1.5e-44 183.0 115 73.0
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 1.5e-44 183.0 115 73.9
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 1.0e-43 180.3 115 73.0
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.9e-43 178.7 118 71.2
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 3.8e-43 178.3 115 73.0
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 3.8e-43 178.3 125 71.2
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 4.9e-43 177.9 103 79.6
Os09g0121000 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 2.5e-42 175.6 115 69.6
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 5.5e-42 174.5 115 70.4
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 1.6e-41 172.9 103 74.8
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 3.5e-41 171.8 115 70.4
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 3.5e-41 171.8 145 55.2
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 6.0e-41 171.0 126 67.5
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.3e-40 169.9 103 80.6
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 2.3e-40 169.1 103 76.7
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 3.9e-40 168.3 115 69.6
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 5.1e-40 167.9 121 70.2
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 6.9e-37 157.5 118 62.7
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 1.0e-35 153.7 116 63.8
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 3.2e-34 148.7 115 65.2
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 7.9e-33 144.1 80 83.8
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 7.9e-33 144.1 103 68.0
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 1.0e-32 143.7 80 82.5
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 1.8e-32 142.9 79 86.1
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.1e-29 133.7 115 58.3
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.8e-29 132.9 80 82.5
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 3.2e-26 122.1 118 50.8
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 3.2e-26 122.1 115 48.7
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 7.2e-26 120.9 110 52.7
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 3.0e-24 115.5 116 50.9
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 5.1e-24 114.8 115 56.5
SHI13970 Sapria himalayana HOM05D004178 ORTHO05D005204 1.1e-23 113.6 302 28.8
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 3.1e-21 105.5 122 46.7
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 5.9e-20 101.3 106 44.3
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 4.7e-17 91.7 117 41.0
BcaC03g13192 Brassica carinata HOM05D004178 ORTHO05D039567 1.9e-10 69.7 41 75.6
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 3.6e-09 65.5 124 31.5
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 2.3e-08 62.8 116 31.0
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 3.0e-08 62.4 128 28.9
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 5.2e-08 61.6 106 31.1
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 5.2e-08 61.6 38 68.4
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 8.8e-08 60.8 114 31.6
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 1.2e-07 60.5 128 28.9
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.2e-07 60.5 106 33.0
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.5e-07 60.1 80 32.5
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 2.6e-07 59.3 106 33.0
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 3.3e-07 58.9 117 26.5
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 4.4e-07 58.5 106 34.0
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 4.4e-07 58.5 106 31.1
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 4.4e-07 58.5 106 32.1
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 5.7e-07 58.2 106 32.1
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 5.7e-07 58.2 106 32.1
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 1.7e-06 56.6 106 31.1
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.7e-06 56.6 87 41.4
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.7e-06 56.6 83 33.7
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 1.7e-06 56.6 106 31.1
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 2.2e-06 56.2 106 29.2
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 29.2
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 32.1
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 29.2
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 29.2
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 29.2
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 2.8e-06 55.8 106 31.1
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 3.7e-06 55.5 100 33.0
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.7e-06 55.5 100 33.0
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 3.7e-06 55.5 106 29.2
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 3.7e-06 55.5 109 30.3
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 3.7e-06 55.5 106 31.1
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 4.8e-06 55.1 117 29.1
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 4.8e-06 55.1 100 33.0
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 4.8e-06 55.1 114 30.7
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 4.8e-06 55.1 95 30.5
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 4.8e-06 55.1 106 28.3
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 6.3e-06 54.7 83 32.5
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 6.3e-06 54.7 118 29.7
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 6.3e-06 54.7 106 29.2
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 8.2e-06 54.3 106 31.1
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 8.2e-06 54.3 42 64.3
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 8.2e-06 54.3 119 28.6
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 8.2e-06 54.3 83 30.1
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 8.2e-06 54.3 106 30.2
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 8.2e-06 54.3 106 30.2


User provided reference genes

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