Gene: Sopen05g030150

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g030150
  • Transcript Identifier Sopen05g030150.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 73914399-73940777 : positive

Gene Family Information

  • ID HOM05D004178
  • #Genes/#Species 169/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g030150.1

Descriptions

  • Description Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | hypersensitive to MMS, irradiation and MMC (MIM) | FUNCTIONS IN: ATP binding | INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination | LOCATED IN: chromosome, nucleus | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal | BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000724
IEA
InterProdouble-strand break repair via homologous recombination
GO:0006281
IEA
InterProDNA repair
GO:0051276
IEA
InterProchromosome organization
GO:0007062
ISO
PLAZA Integrative Orthologysister chromatid cohesion AT5G07660
GO:0010165
ISO
PLAZA Integrative Orthologyresponse to X-ray AT5G07660
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G61460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030915
IEA
InterProSmc5-Smc6 complex
GO:0005694
IEA
InterProchromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027132 Structural maintenance of chromosomes protein 6
IPR003395 RecF/RecN/SMC, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036277 SMCs flexible hinge superfamily
Mapman id Description
14.3.6.1.2 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE2-SMC5-SMC6 subcomplex.component SMC6