Gene: Sopen01g034670

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g034670
  • Transcript Identifier Sopen01g034670.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 92616617-92647338 : positive

Gene Family Information

  • ID HOM05D005087
  • #Genes/#Species 147/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g034670.1

Descriptions

  • Description Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | structural maintenance of chromosomes 5 (SMC5) | FUNCTIONS IN: ATP binding | INVOLVED IN: sister chromatid cohesion, chromosome segregation | LOCATED IN: chromosome, nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000724
IEA
InterProdouble-strand break repair via homologous recombination
GO:0006281
IEA
InterProDNA repair
GO:0007062
IEA
InterProsister chromatid cohesion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030915
IEA
InterProSmc5-Smc6 complex
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G15920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR027131 Structural maintenance of chromosomes protein 5
IPR003395 RecF/RecN/SMC, N-terminal
Mapman id Description
14.3.6.1.1 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE2-SMC5-SMC6 subcomplex.component SMC5