Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.3e-244 849.4 440 100.0
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 4.8e-236 820.8 440 96.1
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 7.8e-218 760.4 441 88.9
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 7.8e-186 654.1 454 78.0
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.6e-181 639.0 447 71.4
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.3e-180 636.7 450 70.4
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 7.9e-178 627.5 451 71.6
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 3.0e-177 625.5 445 70.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 5.1e-177 624.8 451 70.5
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.1e-176 623.6 437 71.4
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.3e-175 620.2 446 69.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 8.1e-175 617.5 446 69.5
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.4e-174 615.9 447 70.0
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 5.3e-174 614.8 427 73.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 5.3e-174 614.8 445 69.9
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.9e-174 614.4 446 69.1
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-173 612.8 446 69.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.8e-173 611.3 446 69.3
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 3.8e-172 608.6 439 69.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 6.4e-172 607.8 451 68.7
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.9e-171 606.3 449 69.7
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.2e-171 605.5 436 70.9
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 7.1e-171 604.4 461 68.8
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.7e-170 602.4 467 66.6
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.7e-170 602.4 467 66.6
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.5e-170 602.1 459 68.8
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.3e-169 600.1 448 70.3
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.7e-169 597.4 449 69.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.9e-168 596.3 449 69.3
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.5e-168 595.9 444 70.7
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.3e-168 595.1 446 68.6
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 5.6e-168 594.7 446 68.4
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.6e-168 594.7 449 69.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 7.4e-168 594.3 443 69.1
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.4e-166 590.1 455 66.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.8e-166 589.7 446 67.3
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.8e-166 589.7 447 67.1
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.0e-166 587.4 449 68.4
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.6e-165 584.3 449 68.2
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.3e-164 583.6 450 69.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.1e-163 580.5 445 66.7
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.9e-163 579.7 428 69.4
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 9.3e-163 577.4 436 67.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.6e-162 576.6 426 70.2
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.1e-162 576.2 448 66.5
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.1e-162 576.2 442 67.9
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 6.0e-162 574.7 439 67.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.9e-162 574.3 450 66.0
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 7.9e-162 574.3 436 68.1
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.3e-161 573.5 445 66.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 2.3e-161 572.8 447 67.6
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 3.0e-161 572.4 442 65.8
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.7e-161 571.2 436 67.9
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.9e-160 569.7 450 66.2
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 4.3e-160 568.5 428 68.5
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.3e-159 567.0 454 65.2
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 3.7e-159 565.5 428 68.0
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 6.3e-159 564.7 430 68.6
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.1e-158 563.9 428 68.2
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.4e-158 562.8 446 65.5
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 3.1e-158 562.4 426 67.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 5.3e-158 561.6 428 67.5
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 6.9e-158 561.2 428 67.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.6e-157 559.3 449 66.1
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.4e-157 558.9 447 65.3
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 7.7e-157 557.8 436 66.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.3e-156 557.0 446 65.2
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.2e-156 556.2 428 67.8
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 4.6e-154 548.5 428 66.6
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-152 543.1 437 64.8
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 4.3e-152 542.0 433 65.4
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 9.7e-152 540.8 430 66.7
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 2.8e-151 539.3 430 66.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 3.7e-151 538.9 442 66.1
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-150 537.3 443 62.8
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.4e-150 537.0 430 66.5
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 2.4e-150 536.2 405 68.6
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 3.4e-149 532.3 506 59.5
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.9e-149 531.6 454 62.6
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.6e-146 523.5 443 62.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-144 516.9 436 65.4
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.3e-144 515.8 454 60.6
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 4.4e-144 515.4 447 61.1
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-141 507.3 440 62.0
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.5e-139 500.4 536 53.4
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.9e-139 500.0 403 65.5
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 9.4e-139 497.7 467 58.7
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.0e-137 494.2 427 60.2
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.3e-137 493.0 432 60.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 3.9e-137 492.3 445 58.9
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 4.1e-134 482.3 415 60.5
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.3e-132 477.2 413 64.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.9e-132 476.1 415 59.3
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.7e-130 469.5 452 55.5
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 2.3e-129 466.5 275 89.5
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 3.0e-129 466.1 352 68.5
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 3.2e-123 446.0 450 54.2
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 5.5e-123 445.3 271 80.1
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.1e-118 427.9 355 63.9
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.3e-116 424.1 444 55.2
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.2e-115 419.1 268 76.9
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 5.5e-115 418.7 425 52.0
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.2e-114 417.5 254 79.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 8.3e-111 404.8 422 52.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.4e-110 404.1 253 78.3
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 2.7e-109 399.8 332 62.7
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 5.9e-109 398.7 398 53.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.3e-108 396.7 424 53.8
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.3e-100 370.9 406 51.7
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.9e-99 367.1 229 76.9
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-92 344.0 309 61.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 3.3e-91 339.7 483 42.7
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.1e-89 334.7 363 51.8
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.5e-88 330.9 319 59.6
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.5e-75 287.7 287 59.6
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.2e-70 270.0 272 55.9
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-69 268.1 274 51.8
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.8e-65 254.2 238 56.3
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 6.4e-63 245.7 247 57.5
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.9e-59 234.2 210 60.0
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.9e-59 234.2 390 40.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.1e-58 230.7 425 35.3
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.2e-54 216.5 215 56.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.5e-51 208.0 258 46.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.1e-49 201.8 197 55.8
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.4e-49 201.4 138 65.9
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.3e-47 194.9 255 42.7
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.4e-40 170.2 148 58.1
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.9e-40 169.5 106 79.2
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 3.6e-37 160.2 98 80.6
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.0e-36 158.7 86 86.0
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.2e-32 145.2 87 78.2
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 6.1e-29 132.9 87 67.8
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.4e-28 131.7 74 82.4
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.6e-27 127.5 264 32.6
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 5.7e-27 126.3 86 70.9
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 9.4e-22 109.0 188 42.0
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.2e-21 108.6 79 69.6
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 5.3e-17 93.2 92 55.4
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.0e-16 91.3 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.5e-16 90.1 188 37.2
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.5e-14 85.1 59 69.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-12 79.0 73 54.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.3e-12 77.8 81 53.1
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 3.5e-08 63.9 36 83.3
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-06 58.9 44 61.4
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.2e-06 57.0 57 49.1


User provided reference genes

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