Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 9.1e-163 577.0 329 100.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.6e-74 283.9 300 51.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 8.8e-73 278.1 305 49.8
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 2.1e-66 256.9 280 51.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.7e-63 247.3 307 44.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.4e-62 244.2 289 45.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.6e-61 240.0 307 43.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.6e-61 240.0 304 41.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 3.4e-61 239.6 304 41.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.9e-61 238.8 311 43.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.9e-61 238.8 299 44.5
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.0e-60 238.0 300 42.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.3e-60 237.7 303 42.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-60 237.3 305 43.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.7e-60 237.3 306 42.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.2e-60 236.9 310 43.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.8e-60 236.1 307 41.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 5.0e-60 235.7 300 42.3
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.0e-60 235.7 305 42.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 5.0e-60 235.7 308 40.3
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 6.5e-60 235.3 307 42.3
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 6.5e-60 235.3 305 42.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 8.5e-60 235.0 300 42.7
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 8.5e-60 235.0 304 41.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-59 234.6 299 42.5
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.1e-59 234.6 303 42.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.1e-59 234.6 293 43.0
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.4e-59 234.2 299 43.8
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.9e-59 233.8 305 42.3
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.2e-59 232.6 307 41.4
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.2e-59 232.6 299 43.5
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.2e-59 232.6 301 42.2
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 4.2e-59 232.6 303 41.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.2e-59 232.6 308 41.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 5.5e-59 232.3 289 44.6
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 5.5e-59 232.3 311 43.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 7.2e-59 231.9 288 43.4
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 7.2e-59 231.9 304 41.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.2e-59 231.9 310 42.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 7.2e-59 231.9 286 43.0
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 9.4e-59 231.5 303 41.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 9.4e-59 231.5 294 43.9
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 9.4e-59 231.5 307 39.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 9.4e-59 231.5 301 42.2
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 9.4e-59 231.5 304 40.8
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.2e-58 231.1 305 41.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.2e-58 231.1 301 41.2
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.6e-58 230.7 303 42.6
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-58 230.3 313 40.6
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-58 230.3 302 41.4
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.1e-58 230.3 309 41.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-58 229.6 290 43.1
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.6e-58 229.6 305 42.0
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.6e-58 229.6 305 42.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.6e-58 229.6 306 41.2
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.6e-58 229.6 305 41.0
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 6.1e-58 228.8 304 41.4
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.1e-58 228.8 308 40.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.1e-58 228.8 300 42.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.1e-58 228.8 305 41.3
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 6.1e-58 228.8 303 41.9
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 8.0e-58 228.4 303 42.2
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 8.0e-58 228.4 294 41.2
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.0e-57 228.0 292 43.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.0e-57 228.0 306 40.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.4e-57 227.6 308 40.3
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.4e-57 227.6 290 43.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.8e-57 227.3 289 44.3
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.8e-57 227.3 300 42.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.8e-57 227.3 299 42.5
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.3e-57 226.9 304 42.4
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.3e-57 226.9 271 43.2
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.9e-57 226.1 292 43.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.7e-57 225.3 287 41.5
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 8.8e-57 224.9 304 41.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 8.8e-57 224.9 291 42.6
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 8.8e-57 224.9 292 43.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.5e-56 224.2 302 41.7
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.5e-56 224.2 303 40.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.0e-56 223.8 288 43.8
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.0e-56 223.8 306 41.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.0e-56 223.8 321 39.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.6e-56 223.4 301 39.9
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.6e-56 223.4 304 40.1
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.3e-56 223.0 301 40.2
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.3e-56 223.0 301 40.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 4.4e-56 222.6 182 56.0
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.7e-56 222.2 308 39.0
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 7.4e-56 221.9 198 51.5
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 7.4e-56 221.9 271 43.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 9.7e-56 221.5 303 39.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.3e-55 221.1 303 40.3
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.7e-55 220.7 302 40.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.2e-55 220.3 318 39.0
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.2e-55 220.3 290 43.1
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.2e-55 220.3 300 41.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.8e-55 219.9 305 38.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 8.2e-55 218.4 297 41.1
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.8e-54 217.2 286 41.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.4e-54 216.9 309 37.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.1e-54 216.5 286 41.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 3.5e-53 213.0 319 39.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 5.9e-53 212.2 330 38.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.5e-52 208.4 303 38.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.5e-51 205.7 270 41.9
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 9.4e-51 204.9 351 35.0
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.0e-49 199.5 309 37.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.5e-48 197.6 303 37.6
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.3e-47 194.5 302 41.1
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.8e-47 192.6 355 35.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 6.3e-47 192.2 300 37.3
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 4.1e-46 189.5 301 39.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 5.9e-45 185.7 287 38.0
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.2e-44 183.7 176 51.1
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.6e-42 176.4 286 38.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.7e-42 176.0 300 36.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.4e-41 174.5 190 49.5
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.0e-41 173.3 303 41.3
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 5.4e-38 162.5 159 50.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.0e-36 158.3 244 37.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.8e-36 156.4 198 42.9
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 6.6e-36 155.6 291 34.7
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.3e-33 147.1 285 34.7
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.4e-30 137.1 110 60.9
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 9.2e-30 135.2 128 50.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.6e-29 134.4 196 42.3
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 4.7e-26 122.9 192 38.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.1e-26 122.5 289 32.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-25 121.3 194 39.7
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 3.1e-25 120.2 191 38.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.0e-25 119.8 191 39.3
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 3.4e-24 116.7 112 46.4
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.9e-23 113.6 112 46.4
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.9e-22 110.9 114 42.1
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.0e-22 109.0 184 35.9
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.2e-22 108.6 307 28.7
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 2.7e-21 107.1 104 47.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.0e-20 105.1 153 39.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.3e-20 104.8 113 44.2
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-20 104.4 190 33.7
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.7e-20 104.4 181 37.6
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.3e-20 104.0 139 40.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.2e-18 98.2 112 43.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.4e-17 94.7 82 48.8
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 8.9e-17 92.0 76 57.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.4e-16 89.7 115 40.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.7e-13 80.5 112 40.2
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.5e-11 74.7 144 31.9
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.5e-11 73.9 56 57.1
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.4e-09 68.2 70 44.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.5e-08 64.7 141 29.1
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.7e-07 61.2 86 31.4
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.4e-07 59.3 145 30.3
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 5.4e-06 56.2 80 42.5


User provided reference genes

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