Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 0.0e+00 3591.6 2184 100.0
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.6e-271 941.0 2208 35.1
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 2.4e-251 874.0 2240 32.1
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.2e-228 797.7 2227 30.1
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 1.8e-227 794.7 2281 31.6
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 5.6e-224 783.1 2234 30.4
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 3.1e-222 777.3 2187 29.8
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 5.2e-222 776.5 2195 29.9
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 8.9e-222 775.8 2219 30.1
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 5.8e-221 773.1 2222 29.9
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 9.8e-221 772.3 2222 29.8
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 8.3e-220 769.2 2231 29.6
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.9e-219 768.1 2221 30.0
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 2.4e-219 767.7 2172 30.6
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 4.1e-219 766.9 2221 29.9
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.0e-219 766.1 2224 29.8
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 1.2e-218 765.4 2234 29.8
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 2.0e-218 764.6 2214 29.8
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 3.5e-218 763.8 2208 29.6
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.0e-218 763.1 2226 29.8
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 5.0e-217 760.0 2222 29.2
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.1e-216 758.8 2215 29.8
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.9e-216 758.1 2229 29.3
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 2.1e-215 754.6 2208 29.4
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.7e-215 753.4 2223 29.7
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 2.3e-214 751.1 2222 29.5
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 5.2e-214 750.0 2203 29.7
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 5.2e-214 750.0 2191 29.3
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.0e-213 748.0 2218 30.1
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 2.0e-213 748.0 2192 29.2
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 3.4e-213 747.3 2215 29.1
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 5.8e-213 746.5 2183 29.3
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 7.5e-213 746.1 2176 29.8
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.5e-213 746.1 2221 29.2
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 9.8e-213 745.7 2252 29.4
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 9.8e-213 745.7 2173 29.2
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.3e-212 745.3 2224 29.5
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 1.3e-212 745.3 2206 28.6
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 3.7e-212 743.8 2187 29.7
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 3.7e-212 743.8 2187 29.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 4.9e-212 743.4 2237 29.5
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 8.3e-212 742.7 2171 29.5
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.4e-211 741.9 2220 29.0
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.4e-211 741.1 2188 30.0
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 3.2e-211 740.7 2250 29.5
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 4.1e-211 740.3 2192 29.7
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 2.7e-210 737.6 2193 29.4
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 1.0e-209 735.7 2209 29.2
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.3e-209 734.6 2096 29.3
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 6.6e-209 733.0 2197 29.2
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 8.6e-209 732.6 2242 29.2
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 1.5e-208 731.9 2193 29.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.5e-208 731.1 2183 29.5
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 3.3e-208 730.7 2179 30.0
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 5.6e-208 729.9 2226 29.2
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 7.3e-208 729.6 2218 29.1
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.6e-207 728.4 2187 28.9
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.1e-207 728.0 2221 29.0
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.6e-207 727.2 2206 28.7
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 8.1e-207 726.1 2190 29.1
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 8.1e-207 726.1 2286 28.8
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 6.8e-206 723.0 2179 29.1
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 3.4e-205 720.7 2153 29.6
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 4.9e-204 716.8 2236 29.0
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 6.4e-204 716.5 2193 29.0
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.9e-203 714.9 2214 28.6
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 9.2e-203 712.6 2188 28.7
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.7e-202 711.1 2205 29.2
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 6.0e-202 709.9 2237 28.6
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 6.0e-202 709.9 2222 28.1
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 1.3e-201 708.8 2179 29.4
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 3.0e-201 707.6 2242 29.5
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 8.6e-201 706.1 2185 28.2
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.1e-200 705.7 2246 28.8
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.9e-200 704.9 2283 28.6
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 3.3e-200 704.1 2235 28.8
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 1.2e-199 702.2 2093 29.4
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 6.2e-199 699.9 2271 28.7
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 2.4e-198 698.0 2198 28.6
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.0e-197 694.9 2226 28.5
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 1.7e-196 691.8 2206 28.9
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 8.4e-196 689.5 2202 28.1
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 9.2e-195 686.0 2257 28.1
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 7.8e-194 682.9 2166 28.1
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 2.4e-190 671.4 2012 29.4
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.6e-183 648.7 2145 28.1
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 8.1e-183 646.4 2302 26.7
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.1e-182 646.0 1979 29.2
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.0e-177 629.4 1957 29.9
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 1.3e-177 629.0 2221 27.6
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 3.9e-177 627.5 2268 27.0
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 6.0e-170 603.6 1821 29.4
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 7.9e-170 603.2 2220 27.2
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 5.8e-165 587.0 2279 29.1
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.3e-164 585.9 2177 26.9
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.9e-164 583.9 2099 27.2
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 6.7e-161 573.5 1829 29.1
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 4.1e-150 537.7 2026 26.7
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.8e-145 522.3 1441 29.4
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.3e-145 521.9 2238 26.1
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 5.1e-145 520.8 1428 29.4
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 5.7e-144 517.3 2014 27.7
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.0e-133 482.3 1581 28.8
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 7.7e-133 480.3 1425 28.2
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 4.2e-131 474.6 1310 32.0
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 4.8e-127 461.1 1506 28.1
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 5.7e-120 437.6 1416 27.3
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 6.6e-108 397.5 1959 25.2
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 8.9e-105 387.1 875 33.6
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 4.1e-102 378.3 1321 28.0
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 1.1e-97 363.6 930 30.3
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 3.4e-96 358.6 2222 24.2
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 1.9e-94 352.8 820 33.7
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.4e-94 352.4 1331 27.3
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.6e-80 305.8 627 33.8
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 1.1e-78 300.4 1392 24.4
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.1e-75 290.4 333 47.1
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 9.6e-75 287.3 294 48.3
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 5.8e-72 278.1 307 47.6
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.8e-71 275.4 296 47.0
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 1.4e-70 273.5 655 30.2
CDE02G0114 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 1.8e-65 256.5 627 32.7
SEGI_22431 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.5e-59 236.9 591 31.5
QL07p025506 Quercus lobata HOM05D003161 ORTHO05D005173 5.3e-57 228.4 673 31.2
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 1.0e-55 224.2 271 45.4
HPP92_015879 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.8e-55 222.2 547 32.2
AUR62041562 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.9e-52 212.2 590 30.0
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.1e-49 204.1 225 47.1
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 9.0e-49 201.1 928 24.2
SEGI_32968 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 4.5e-48 198.7 397 34.3
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 1.4e-46 193.7 193 49.7
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 6.7e-44 184.9 194 48.5
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.4e-41 177.2 752 25.0
vmacro22129 Vaccinium macrocarpon HOM05D003161 ORTHO05D015567 1.7e-39 170.2 433 30.9
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.5e-39 168.3 223 42.2
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.7e-37 162.9 195 44.1
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 4.6e-37 162.2 196 40.3
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 3.0e-36 159.5 639 25.5
MD14G1050300 Malus domestica HOM05D003161 ORTHO05D005173 3.0e-36 159.5 432 31.0
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 2.8e-34 152.9 286 34.6
Psat7g030280 Pisum sativum HOM05D003161 ORTHO05D005173 2.9e-31 142.9 293 32.1
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.6e-29 136.0 414 24.9
SEGI_29966 Sequoiadendron giganteum HOM05D003161 ORTHO05D015567 1.1e-22 114.4 278 35.3
vmacro22127 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.1e-22 114.4 411 27.7
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 9.4e-22 111.3 119 47.1
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.3e-20 106.7 178 36.0
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.4e-19 102.4 207 32.9
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.2e-18 100.1 166 36.1
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-17 97.8 161 34.8
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 2.4e-17 96.7 438 24.7
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.2e-16 94.4 447 23.3
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 2.7e-16 93.2 165 34.5
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 5.9e-16 92.0 97 46.4
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 6.5e-15 88.6 158 38.0
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 5.5e-14 85.5 91 45.1
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 4.7e-13 82.4 125 40.8
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 8.0e-13 81.6 114 39.5
SEGI_33580 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 8.0e-13 81.6 284 27.5
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.8e-12 80.5 161 32.9
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.0e-12 79.7 165 32.1
SMO215G0003 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.0e-12 79.3 173 34.1
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.0e-11 77.0 112 37.5
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.4e-11 76.3 172 30.8
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.7e-10 72.8 161 30.4
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 2.4e-09 70.1 143 37.1
Medtr3g069250 Medicago truncatula HOM05D003161 ORTHO05D013615 2.4e-09 70.1 103 35.9
PRCOL_00005744 Prasinoderma coloniale HOM05D004115 ORTHO05D005004 7.0e-09 68.6 172 29.1
Psat2g048720 Pisum sativum HOM05D003161 ORTHO05D002506 3.5e-08 66.2 153 29.4
SHI30031 Sapria himalayana HOM05D003161 ORTHO05D005173 4.5e-08 65.9 178 28.1
MCO11G836 Micromonas commoda HOM05D004115 ORTHO05D005004 5.0e-07 62.4 191 24.6
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.1e-06 61.2 71 42.3
CAN.G1433.26 Capsicum annuum HOM05D003161 ORTHO05D015567 2.5e-06 60.1 238 26.1
MCO05G210 Micromonas commoda HOM05D001971 ORTHO05D003057 4.2e-06 59.3 258 22.9
Cre12.g519180 Chlamydomonas reinhardtii HOM05D004115 ORTHO05D005004 5.5e-06 58.9 98 38.8


User provided reference genes

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