Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 0.0e+00 3289.2 3071 100.0
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 5.2e-135 488.0 1483 27.1
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 6.2e-128 464.5 1642 26.0
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 1.2e-120 440.3 1464 26.0
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.2e-118 433.7 1466 25.9
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 4.9e-117 428.3 1467 25.2
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.4e-116 426.0 1469 25.0
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 4.1e-116 425.2 1626 25.1
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 2.1e-115 422.9 1458 25.7
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 2.7e-115 422.5 726 36.0
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 1.7e-114 419.9 1464 25.1
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 2.3e-114 419.5 1466 25.2
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 4.3e-113 415.2 1471 24.5
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 2.1e-112 412.9 1461 24.9
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 2.8e-112 412.5 1465 24.6
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 3.6e-112 412.1 1622 24.2
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 3.6e-112 412.1 1666 24.2
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 4.7e-112 411.8 1628 24.1
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 6.2e-112 411.4 1464 24.9
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 1.8e-111 409.8 1467 24.3
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 5.2e-111 408.3 718 34.5
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 8.9e-111 407.5 1471 24.7
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 2.0e-110 406.4 1465 24.6
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 4.4e-110 405.2 1482 24.6
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 5.8e-110 404.8 710 34.8
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 7.6e-110 404.4 1464 24.5
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 4.9e-109 401.7 1470 24.9
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 6.4e-109 401.4 1461 24.8
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 8.4e-109 401.0 1464 24.7
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 1.1e-108 400.6 730 34.4
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 1.9e-108 399.8 1472 24.1
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 1.9e-108 399.8 1621 23.5
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 5.4e-108 398.3 713 35.1
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 5.4e-108 398.3 713 35.1
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 7.1e-108 397.9 1464 25.1
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 3.5e-107 395.6 1469 24.4
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 6.0e-107 394.8 1464 24.4
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 6.0e-107 394.8 706 34.4
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 7.8e-107 394.4 706 34.1
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 1.0e-106 394.0 703 34.1
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 3.0e-106 392.5 1464 24.1
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 3.0e-106 392.5 1464 24.0
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 1.5e-105 390.2 729 33.6
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 4.3e-105 388.7 704 34.1
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 4.3e-105 388.7 700 34.1
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 5.6e-105 388.3 1459 24.2
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 5.6e-105 388.3 1461 24.4
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 5.6e-105 388.3 728 33.9
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 7.3e-105 387.9 708 34.2
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 1.6e-104 386.7 1464 24.0
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 4.7e-104 385.2 728 33.7
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 1.4e-103 383.6 1465 24.7
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 5.2e-103 381.7 710 34.2
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 5.2e-103 381.7 1467 24.3
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 2.6e-102 379.4 1619 23.7
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 4.4e-102 378.6 708 33.1
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 7.1e-100 371.3 710 32.7
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 1.6e-99 370.2 714 32.1
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 2.1e-99 369.8 704 33.2
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 3.5e-99 369.0 708 33.2
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 3.5e-99 369.0 1437 24.6
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 3.5e-99 369.0 1458 24.7
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 6.0e-99 368.2 1625 23.0
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 1.0e-98 367.5 714 32.8
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 1.3e-98 367.1 1436 24.1
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 5.1e-98 365.2 694 32.4
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 1.1e-97 364.0 708 32.8
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 1.1e-97 364.0 1622 23.4
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.5e-97 363.6 711 32.9
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 2.5e-97 362.8 1475 23.5
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 3.3e-97 362.5 1625 23.3
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 5.6e-97 361.7 709 33.1
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 1.3e-96 360.5 1467 24.0
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 1.4e-95 357.1 717 32.9
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 2.0e-94 353.2 711 32.3
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 4.5e-94 352.1 1700 25.8
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 7.6e-94 351.3 755 32.7
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 1.7e-93 350.1 711 32.9
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 4.9e-93 348.6 1471 24.2
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 1.4e-92 347.1 1649 22.9
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 4.2e-92 345.5 708 32.5
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 4.2e-92 345.5 714 32.1
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 9.3e-92 344.4 703 32.6
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 1.6e-91 343.6 707 32.4
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 6.0e-91 341.7 716 32.3
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.0e-90 340.9 1465 23.8
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 3.9e-90 339.0 1465 23.9
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 9.6e-89 334.3 664 32.1
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 8.1e-88 331.3 1533 23.0
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 1.4e-87 330.5 728 31.3
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 1.7e-85 323.6 686 32.2
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 1.1e-84 320.9 714 31.4
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 2.5e-81 309.7 1621 22.6
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.8e-78 298.5 587 32.7
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 7.6e-78 298.1 646 30.0
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 1.1e-71 277.7 1325 22.5
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 2.0e-70 273.5 767 27.2
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 5.5e-68 265.4 905 29.7
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 5.0e-61 242.3 302 39.4
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.1e-60 241.1 492 32.7
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 6.7e-50 205.3 448 34.4
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 4.4e-49 202.6 540 28.0
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 5.3e-47 195.7 334 37.1
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.5e-45 188.7 193 51.8
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 5.5e-44 185.7 189 49.7
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 7.2e-44 185.3 182 46.2
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 2.3e-42 180.3 187 48.7
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 3.5e-38 166.4 430 28.1
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.7e-37 164.1 191 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 8.8e-34 151.8 187 44.4
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.0e-33 150.6 189 42.3
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.0e-33 150.6 189 42.3
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.4e-31 142.5 191 38.2
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 7.7e-30 138.7 216 39.8
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 3.8e-29 136.3 98 56.1
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 6.5e-29 135.6 307 30.3
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 6.3e-24 119.0 102 57.8
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.6e-21 109.0 197 31.5
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 4.3e-20 106.3 163 33.7
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 4.3e-12 79.7 124 39.5
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 6.2e-11 75.9 80 41.2
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 5.8e-09 69.3 57 59.6
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 1.7e-08 67.8 203 29.6
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 3.7e-08 66.6 51 64.7
COL.COLO4_15612 Corchorus olitorius HOM05D067717 ORTHO05D044775 2.0e-06 60.8 188 28.2
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 7.8e-06 58.9 71 40.8


User provided reference genes

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