Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.6e-244 847.4 514 100.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.2e-158 563.9 511 69.7
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.4e-157 560.5 511 68.3
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.4e-157 559.7 511 69.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 3.1e-157 559.3 511 68.1
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.2e-156 557.4 511 68.9
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 7.6e-156 554.7 512 66.8
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 9.9e-156 554.3 511 68.9
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.3e-155 553.9 511 68.3
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.7e-155 553.5 511 68.7
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.2e-155 553.1 511 68.3
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 2.2e-155 553.1 511 68.3
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 3.8e-155 552.4 511 67.3
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 3.8e-155 552.4 511 68.3
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.9e-155 552.0 511 67.7
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.9e-155 552.0 511 69.5
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 6.4e-155 551.6 512 68.6
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 6.4e-155 551.6 511 67.3
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 8.4e-155 551.2 511 69.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.4e-154 550.4 511 67.9
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.4e-154 550.4 511 68.5
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.4e-154 550.4 511 66.5
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 3.2e-154 549.3 503 70.6
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 4.2e-154 548.9 512 63.1
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 4.2e-154 548.9 511 67.5
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 5.4e-154 548.5 511 68.5
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 5.4e-154 548.5 511 68.9
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 5.4e-154 548.5 511 68.1
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 5.4e-154 548.5 511 69.1
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 7.1e-154 548.1 511 68.3
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 9.3e-154 547.7 511 67.7
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.6e-153 547.0 511 66.9
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.1e-153 546.6 511 63.0
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.1e-153 546.6 511 62.2
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.7e-153 546.2 512 67.8
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.5e-153 545.8 511 67.3
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 6.0e-153 545.0 513 66.9
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 6.0e-153 545.0 511 67.9
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 7.8e-153 544.7 503 68.6
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.0e-152 544.3 511 66.9
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.0e-152 544.3 512 66.8
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.3e-152 543.9 512 66.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.3e-152 543.9 514 63.0
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.3e-152 543.9 511 67.7
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.7e-152 543.5 511 66.5
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.7e-152 543.5 511 67.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.3e-152 543.1 554 63.7
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 3.0e-152 542.7 512 66.6
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 3.0e-152 542.7 511 65.9
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.0e-152 542.7 514 65.8
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.0e-152 542.7 511 66.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 3.0e-152 542.7 512 66.4
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.9e-152 542.3 511 61.8
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 5.1e-152 542.0 510 67.8
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 5.1e-152 542.0 512 67.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 6.6e-152 541.6 511 66.5
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 6.6e-152 541.6 514 62.1
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 8.7e-152 541.2 514 65.4
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 8.7e-152 541.2 514 65.4
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.1e-151 540.8 511 67.9
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.1e-151 540.8 503 69.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.5e-151 540.4 511 61.3
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.9e-151 540.0 511 67.5
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.9e-151 540.0 511 65.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.5e-151 539.7 514 62.3
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 3.3e-151 539.3 512 65.2
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 7.3e-151 538.1 512 68.9
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 7.3e-151 538.1 514 65.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.6e-150 537.0 510 62.2
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.1e-150 536.6 512 65.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.1e-150 536.6 508 61.0
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 2.8e-150 536.2 511 66.5
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-150 535.8 511 67.7
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.4e-149 533.9 512 63.5
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.4e-149 533.9 511 66.5
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.8e-149 533.5 512 62.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.8e-149 533.5 511 65.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 3.1e-149 532.7 511 65.0
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 9.0e-149 531.2 511 64.8
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 9.0e-149 531.2 526 57.4
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 2.0e-148 530.0 506 66.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.0e-148 530.0 511 62.0
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.0e-148 530.0 512 60.2
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 5.8e-148 528.5 511 61.8
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 5.8e-148 528.5 511 61.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 7.6e-148 528.1 510 60.4
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.3e-147 527.3 512 59.8
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.2e-147 526.6 503 64.8
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.9e-147 526.2 511 67.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.9e-146 523.5 503 65.8
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 2.4e-146 523.1 516 65.3
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.2e-146 522.3 539 59.7
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 9.3e-146 521.2 499 64.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.9e-143 513.5 532 63.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-143 513.5 539 58.4
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 4.3e-143 512.3 519 63.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.2e-142 508.4 511 60.7
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.0e-140 503.4 512 64.8
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 6.4e-139 498.4 511 56.6
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.4e-138 497.3 504 65.5
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 2.7e-137 493.0 522 64.2
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.5e-137 492.7 511 54.2
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-136 491.1 480 65.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.3e-134 484.2 462 68.6
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 8.1e-134 481.5 549 52.8
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.4e-133 480.7 467 67.5
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 4.3e-127 459.1 483 62.1
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.6e-121 439.1 511 60.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.4e-117 426.8 434 63.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.3e-115 421.0 431 65.7
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.0e-115 419.1 512 53.7
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 5.7e-111 405.6 429 65.7
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.4e-109 401.0 404 67.3
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 4.4e-103 379.4 273 69.6
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 5.3e-93 345.9 253 68.0
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 7.5e-87 325.5 304 64.1
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 4.2e-82 309.7 388 47.4
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 5.0e-75 286.2 209 69.9
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-74 285.0 209 69.4
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.3e-72 277.3 318 55.7
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 9.8e-71 271.9 523 47.6
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 7.5e-63 245.7 325 57.8
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.9e-48 195.7 255 61.6
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.0e-47 194.5 133 73.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 7.1e-45 186.0 173 64.2
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 2.7e-36 157.5 186 50.5
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 7.3e-34 149.4 210 41.4
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 2.6e-31 141.0 99 63.6
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-29 135.6 140 47.1
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-26 125.6 78 75.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 5.3e-24 116.7 126 54.0
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.2e-23 115.5 240 36.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.0e-23 114.8 72 72.2
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.3e-22 112.1 80 66.2
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.9e-22 110.9 137 48.2
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 8.4e-22 109.4 72 70.8
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.5e-21 106.7 64 76.6
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 5.5e-21 106.7 64 76.6
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.0e-20 103.2 294 27.2
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-12 78.2 56 60.7
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-11 75.5 68 52.9
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.1e-08 63.9 48 66.7
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 6.9e-08 63.2 50 50.0
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.4e-07 60.8 65 43.1
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.4e-07 60.8 65 43.1
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 7.6e-07 59.7 36 75.0
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.9e-06 57.8 36 75.0


User provided reference genes

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