Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.4e-181 637.9 330 100.0
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.4e-132 474.6 332 74.7
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-131 473.8 332 74.4
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.2e-130 470.3 332 73.8
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.6e-130 469.9 327 74.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.7e-130 469.2 327 74.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 6.0e-130 468.0 327 74.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.3e-129 466.1 329 74.2
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.9e-129 465.3 327 73.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 6.6e-129 464.5 323 72.4
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 6.6e-129 464.5 330 72.1
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 8.6e-129 464.2 332 71.4
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.1e-128 463.8 330 73.3
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.2e-127 460.3 331 72.8
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 6.2e-127 458.0 323 71.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 8.1e-127 457.6 332 72.6
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 8.1e-127 457.6 332 70.8
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.4e-126 456.8 332 72.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.4e-126 456.8 330 70.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.8e-126 456.4 324 72.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.1e-126 455.7 348 68.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.1e-126 455.7 328 70.4
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.2e-125 453.8 325 71.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 332 69.9
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 4.4e-125 451.8 329 73.3
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 5.8e-125 451.4 332 72.0
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 7.6e-125 451.1 329 71.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 9.9e-125 450.7 326 70.2
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.3e-124 450.3 332 69.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.3e-124 450.3 324 70.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.2e-124 449.5 332 70.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.9e-124 449.1 332 72.0
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 8.4e-124 447.6 327 71.6
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.9e-123 446.4 332 71.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.2e-123 445.3 329 70.8
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 4.2e-123 445.3 325 69.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 4.2e-123 445.3 325 69.8
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 5.4e-123 444.9 332 69.9
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 9.2e-123 444.1 330 70.3
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.2e-122 443.7 327 70.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.5e-122 442.2 326 70.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.5e-122 442.2 332 70.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 6.0e-122 441.4 334 69.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 6.0e-122 441.4 352 66.8
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 7.8e-122 441.0 330 69.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 7.8e-122 441.0 325 69.8
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.0e-121 440.7 332 68.4
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.3e-121 440.3 325 71.1
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.7e-121 439.9 334 69.5
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.7e-121 439.9 325 68.9
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.3e-121 439.5 318 69.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.9e-121 438.7 327 67.3
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 8.7e-121 437.6 334 68.9
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.5e-120 436.0 294 74.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 4.3e-120 435.3 325 67.7
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 5.6e-120 434.9 330 70.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 5.6e-120 434.9 323 68.1
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.3e-120 434.5 342 66.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 9.6e-120 434.1 330 68.2
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.3e-119 433.7 330 69.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.1e-119 433.0 332 69.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.8e-119 432.6 332 69.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 4.8e-119 431.8 331 68.3
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.8e-119 431.8 332 69.6
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.8e-119 431.8 332 69.6
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.8e-119 431.8 332 66.9
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.2e-119 431.4 330 67.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.2e-119 431.4 326 69.0
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 6.2e-119 431.4 399 60.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-118 430.6 332 69.3
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.8e-118 429.9 330 66.1
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.4e-118 429.5 332 67.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.3e-118 428.3 330 68.2
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 9.0e-118 427.6 325 67.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.5e-117 426.8 326 68.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.0e-117 426.4 330 68.2
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 4.4e-117 425.2 332 66.9
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 9.9e-117 424.1 330 68.8
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.7e-116 423.3 326 66.9
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 6.4e-116 421.4 332 66.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.9e-115 419.9 330 66.4
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.6e-114 415.2 361 61.5
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 6.0e-114 414.8 323 67.2
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.0e-113 414.1 332 68.1
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.3e-113 413.7 327 66.1
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.3e-113 413.7 328 68.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.9e-113 412.1 330 65.2
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.9e-113 412.1 329 66.6
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.1e-113 411.8 329 66.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 8.7e-113 411.0 329 66.9
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-111 407.1 327 65.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-111 407.1 365 61.1
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.1e-111 406.4 326 65.3
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.8e-111 406.0 327 65.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 3.6e-111 405.6 288 71.2
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.6e-111 405.6 326 64.4
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.8e-111 405.2 327 64.5
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.8e-108 395.6 320 64.4
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 7.1e-107 391.3 319 62.7
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.1e-106 389.8 279 71.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.3e-105 386.3 316 63.9
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 9.6e-104 380.9 326 61.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.7e-103 379.0 328 61.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 6.2e-103 378.3 322 62.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 4.5e-101 372.1 320 60.0
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.2e-99 365.5 326 59.8
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.2e-99 365.5 325 60.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.5e-96 356.3 323 58.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 4.0e-94 349.0 333 59.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 7.9e-90 334.7 331 56.5
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-89 333.2 326 57.7
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.6e-87 327.0 322 56.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.2e-84 316.6 330 56.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.5e-83 313.2 275 60.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 3.9e-81 305.8 314 51.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.3e-80 302.8 316 52.2
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-72 275.4 336 49.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.8e-71 273.1 322 46.3
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.5e-67 260.8 179 76.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 8.8e-65 251.5 198 63.6
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 9.7e-64 248.1 287 46.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-61 240.4 272 52.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.9e-60 236.5 214 60.3
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-59 234.2 188 65.4
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.5e-59 232.3 187 64.2
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.2e-59 231.9 327 46.2
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.6e-58 229.6 197 60.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 8.0e-58 228.4 289 44.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-49 201.4 142 71.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.0e-48 197.2 158 61.4
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 5.4e-46 189.1 134 68.7
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.6e-45 187.6 128 73.4
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 4.5e-45 186.0 129 71.3
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 6.1e-42 175.6 129 70.5
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 5.2e-41 172.6 253 39.1
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-40 171.4 114 73.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.9e-39 166.8 233 41.2
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 6.3e-39 165.6 148 56.8
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.4e-38 162.5 147 57.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.7e-37 160.2 267 36.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.9e-36 156.4 183 48.1
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 8.6e-36 155.2 125 68.0
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.5e-35 153.7 144 55.6
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.3e-35 152.9 139 57.6
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 5.6e-35 152.5 135 60.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.8e-34 150.2 199 44.2
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.7e-34 149.4 212 42.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.8e-33 145.6 153 51.0
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 4.6e-29 132.9 80 78.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.8e-26 123.6 197 38.1
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.3e-25 120.6 126 50.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.8e-24 115.9 113 54.9
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 5.4e-22 109.4 86 69.8
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 5.4e-22 109.4 86 69.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.0e-20 103.6 79 69.6
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 7.3e-19 99.0 124 51.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 3.1e-17 93.6 197 36.0
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.1e-17 93.6 69 72.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.1e-13 80.9 63 69.8
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-11 75.1 61 60.7
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.5e-11 73.9 61 63.9
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-07 61.2 45 64.4


User provided reference genes

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