Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 7.0e-90 334.0 171 100.0
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 9.5e-63 243.8 210 63.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 9.5e-63 243.8 210 63.8
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.6e-62 241.9 210 63.3
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.2e-62 241.1 211 63.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.1e-61 240.4 210 62.9
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.1e-61 238.8 211 63.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 5.2e-61 238.0 210 61.9
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 6.8e-61 237.7 210 62.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.5e-60 236.5 210 62.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-60 236.1 211 62.6
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.6e-60 235.7 211 62.6
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 5.8e-60 234.6 210 60.5
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 9.8e-60 233.8 210 61.4
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-59 233.4 211 62.1
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.7e-59 233.0 207 62.8
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.2e-59 232.6 210 61.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.2e-59 232.6 210 61.4
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.2e-59 232.6 210 61.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 4.9e-59 231.5 210 60.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 6.4e-59 231.1 210 60.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.4e-59 231.1 210 60.5
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.4e-59 231.1 211 61.6
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 6.4e-59 231.1 210 61.0
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.4e-59 231.1 210 60.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 8.3e-59 230.7 210 61.4
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 8.3e-59 230.7 210 60.0
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 8.3e-59 230.7 210 60.5
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.1e-58 230.3 210 59.5
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.4e-58 229.9 210 60.5
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.2e-58 228.8 210 60.0
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.2e-58 228.8 210 59.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 5.4e-58 228.0 210 60.5
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 9.2e-58 227.3 210 61.9
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 9.2e-58 227.3 210 59.0
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.2e-57 226.9 210 61.0
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 2.1e-57 226.1 210 61.0
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.1e-57 226.1 210 61.4
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.6e-57 224.9 210 58.1
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.0e-56 223.8 210 59.5
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.0e-56 223.8 210 58.6
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.0e-56 223.8 210 60.0
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-56 223.4 210 59.5
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.7e-56 223.0 227 55.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.7e-56 223.0 227 55.9
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.7e-56 223.0 210 58.6
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.3e-56 222.6 210 58.6
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 2.3e-56 222.6 210 59.0
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.3e-56 222.6 210 60.0
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.0e-56 222.2 205 60.0
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.0e-56 222.2 211 58.8
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 5.1e-56 221.5 210 59.0
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 5.1e-56 221.5 210 60.0
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 5.1e-56 221.5 153 76.5
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.1e-56 221.5 207 59.9
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 5.1e-56 221.5 210 58.6
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 6.6e-56 221.1 205 59.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 6.6e-56 221.1 210 59.0
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.1e-55 220.3 210 58.6
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-55 219.9 205 60.0
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.3e-55 218.8 210 58.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.3e-55 218.8 210 58.6
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.3e-55 218.8 211 57.8
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 4.3e-55 218.4 210 57.6
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 4.3e-55 218.4 210 58.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 4.3e-55 218.4 210 58.6
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 7.3e-55 217.6 210 58.1
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 7.3e-55 217.6 211 58.3
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-54 216.9 210 57.6
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.1e-54 216.1 210 57.1
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 2.1e-54 216.1 210 56.2
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.1e-54 216.1 210 55.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.7e-54 214.9 210 56.7
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 8.1e-54 214.2 211 57.8
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.1e-53 213.8 196 58.7
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.0e-53 211.8 210 57.1
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 6.8e-53 211.1 210 55.7
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 8.9e-53 210.7 210 55.2
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.2e-52 210.3 210 57.1
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.2e-52 210.3 210 57.1
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.2e-52 210.3 210 57.1
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.5e-52 209.9 210 56.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 9.9e-52 207.2 210 55.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 9.9e-52 207.2 210 55.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.7e-51 206.5 210 56.7
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.7e-51 206.5 210 56.7
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.1e-50 203.8 153 69.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.4e-50 203.4 210 54.8
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.7e-49 199.1 210 55.7
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 4.6e-49 198.4 210 52.9
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.0e-49 198.0 214 53.3
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.0e-48 197.2 212 53.3
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.5e-47 193.4 178 60.7
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.3e-47 192.2 207 52.7
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.6e-46 189.9 210 51.9
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.8e-46 189.1 237 51.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.1e-45 187.2 284 43.3
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.5e-44 183.3 199 53.3
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.5e-44 183.3 210 50.5
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 5.8e-44 181.4 210 50.0
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 2.4e-42 176.0 185 55.1
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.9e-40 168.7 205 46.8
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.1e-38 162.9 193 52.3
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 3.6e-38 162.2 185 51.9
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.1e-37 160.6 92 83.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.5e-36 156.8 209 45.5
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.9e-34 149.8 188 50.5
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.2e-34 149.1 210 44.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 6.6e-32 141.4 198 45.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.1e-31 140.6 205 43.9
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.3e-31 139.0 115 60.9
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.8e-30 136.0 206 42.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.6e-28 129.4 183 43.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.5e-28 128.6 73 84.9
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 6.4e-27 124.8 85 69.4
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.1e-26 124.0 92 63.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 6.7e-24 114.8 75 78.7
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 3.3e-23 112.5 63 87.3
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.6e-22 110.2 70 78.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.8e-22 108.6 140 48.6
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.1e-22 107.8 70 77.1
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 4.0e-21 105.5 63 81.0
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 9.0e-21 104.4 67 73.1
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.2e-20 104.0 64 84.4
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.4e-20 102.4 63 81.0
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.8e-19 99.0 63 74.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.9e-18 96.7 67 77.6
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.2e-18 95.9 65 69.2
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 8.7e-16 87.8 217 30.9
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 2.4e-13 79.7 56 69.6
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 2.0e-12 76.6 223 29.6
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.6e-12 76.3 48 79.2
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 7.6e-12 74.7 53 69.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.7e-11 73.6 76 56.6
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.2e-10 69.3 157 34.4
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.6e-09 67.0 214 28.5
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-07 60.8 141 34.0
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.5e-07 60.5 47 59.6
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 9.7e-07 57.8 36 75.0


User provided reference genes

Program Settings