Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc31.6 Carica papaya HOM05D001141 ORTHO05D001088 7.3e-22 106.3 53 100.0
Gohir.D09G093800 Gossypium hirsutum HOM05D001141 ORTHO05D001088 6.9e-20 99.8 53 92.5
Gorai.006G110500 Gossypium raimondii HOM05D001141 ORTHO05D001088 6.9e-20 99.8 53 92.5
Eucgr.J00456 Eucalyptus grandis HOM05D001141 ORTHO05D001088 2.6e-19 97.8 51 94.1
Hma1.2p1_0695F.1_g204520 Hydrangea macrophylla HOM05D001141 ORTHO05D001088 9.9e-19 95.9 51 90.2
Cc01_g09600 Coffea canephora HOM05D001141 ORTHO05D001088 1.3e-18 95.5 51 90.2
Actinidia37091 Actinidia chinensis HOM05D001141 ORTHO05D001088 2.2e-18 94.7 51 90.2
ClCG02G022000 Citrullus lanatus HOM05D001141 ORTHO05D001088 2.2e-18 94.7 51 90.2
TAR636G1346 Trochodendron aralioides HOM05D001141 ORTHO05D001088 2.2e-18 94.7 51 90.2
Manes.04G007000 Manihot esculenta HOM05D001141 ORTHO05D001088 2.9e-18 94.4 51 90.2
Thecc.09G289300 Theobroma cacao HOM05D001141 ORTHO05D001088 2.9e-18 94.4 53 88.7
PGR119G0561 Punica granatum HOM05D001141 ORTHO05D001088 3.8e-18 94.0 51 88.2
CSS0014709 Camellia sinensis var. sinensis HOM05D001141 ORTHO05D001088 4.9e-18 93.6 51 88.2
COL.COLO4_19949 Corchorus olitorius HOM05D001141 ORTHO05D001088 4.9e-18 93.6 53 88.7
TWI75G0390 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 4.9e-18 93.6 51 88.2
MBI01_g08271_MAGBIO Magnolia biondii HOM05D001141 ORTHO05D001088 8.4e-18 92.8 51 86.3
Sed0004685 Sechium edule HOM05D001141 ORTHO05D001088 8.4e-18 92.8 51 88.2
Rhsim01G0206600 Rhododendron simsii HOM05D001141 ORTHO05D001088 1.1e-17 92.4 51 88.2
Hund20863 Selenicereus undatus HOM05D001141 ORTHO05D001088 1.1e-17 92.4 51 84.3
MELO3C021442.2 Cucumis melo HOM05D001141 ORTHO05D001088 1.4e-17 92.0 51 88.2
CsaV3_6G014830 Cucumis sativus L. HOM05D001141 ORTHO05D001088 1.4e-17 92.0 51 88.2
Duzib150G0242 Durio zibethinus HOM05D001141 ORTHO05D001088 1.9e-17 91.7 53 86.8
HanXRQChr11g0345901 Helianthus annuus HOM05D001141 ORTHO05D001088 2.4e-17 91.3 51 84.3
GSVIVG01031375001 Vitis vinifera HOM05D001141 ORTHO05D001088 2.4e-17 91.3 51 86.3
MD11G1159400 Malus domestica HOM05D001141 ORTHO05D001088 4.2e-17 90.5 51 86.3
MSTRG.12361 Avicennia marina HOM05D001141 ORTHO05D001088 5.4e-17 90.1 51 86.3
Lj2A991G80 Lonicera japonica HOM05D001141 ORTHO05D001088 5.4e-17 90.1 51 84.3
RcHm_v2.0_Chr7g0218461 Rosa chinensis HOM05D001141 ORTHO05D001088 5.4e-17 90.1 51 84.3
TWI79G0393 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 5.4e-17 90.1 51 86.3
TWI79G1505 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 5.4e-17 90.1 51 86.3
Atru.chr3.3346 Acer truncatum HOM05D001141 ORTHO05D001088 7.1e-17 89.7 52 86.5
Nn5g28376 Nelumbo nucifera HOM05D001141 ORTHO05D001088 7.1e-17 89.7 51 86.3
HanXRQChr01g0019731 Helianthus annuus HOM05D001141 ORTHO05D001088 9.3e-17 89.4 51 84.3
Nn2g14059 Nelumbo nucifera HOM05D001141 ORTHO05D001088 1.6e-16 88.6 51 86.3
Potri.001G460000 Populus trichocarpa HOM05D001141 ORTHO05D001088 1.6e-16 88.6 48 89.6
TPR.G15586 Trifolium pratense HOM05D001141 ORTHO05D001088 1.6e-16 88.6 52 82.7
Ciclev10029823m.g Citrus clementina HOM05D001141 ORTHO05D001088 2.1e-16 88.2 52 84.6
FvH4_5g27310 Fragaria vesca HOM05D001141 ORTHO05D001088 2.1e-16 88.2 51 82.4
FAN04G3252 Fragaria x ananassa HOM05D001141 ORTHO05D001088 2.1e-16 88.2 51 82.4
FAN13G0031 Fragaria x ananassa HOM05D001141 ORTHO05D001088 2.1e-16 88.2 51 82.4
Ca_19381_v3 Cicer arietinum L. HOM05D001141 ORTHO05D001088 2.7e-16 87.8 52 82.7
Lalb_Chr19g0136691 Lupinus albus HOM05D001141 ORTHO05D001088 2.7e-16 87.8 52 84.6
QL01p013377 Quercus lobata HOM05D001141 ORTHO05D001088 2.7e-16 87.8 51 84.3
ECA248G3665 Erigeron canadensis HOM05D001141 ORTHO05D001088 3.5e-16 87.4 51 84.3
arahy.Tifrunner.gnm1.ann1.HKB08G Arachis hypogaea HOM05D001141 ORTHO05D001088 4.6e-16 87.0 52 84.6
arahy.Tifrunner.gnm1.ann1.ZNV7VU Arachis hypogaea HOM05D001141 ORTHO05D001088 4.6e-16 87.0 52 84.6
Migut.N02507 Erythranthe guttata HOM05D001141 ORTHO05D001088 4.6e-16 87.0 51 80.4
Sabra11G0143600 Salix brachista HOM05D001141 ORTHO05D001088 4.6e-16 87.0 48 89.6
GSVIVG01018365001 Vitis vinifera HOM05D001141 ORTHO05D001088 4.6e-16 87.0 51 82.4
Aqoxy4G02844 Aquilegia oxysepala HOM05D001141 ORTHO05D001088 6.0e-16 86.7 49 85.7
EL10Ac2g02439 Beta vulgaris HOM05D001141 ORTHO05D001088 6.0e-16 86.7 51 86.3
Medtr4g055080 Medicago truncatula HOM05D001141 ORTHO05D001088 6.0e-16 86.7 52 82.7
SalBow3G1486 Salvia bowleyana HOM05D001141 ORTHO05D001088 6.0e-16 86.7 51 82.4
FAN18G4255 Fragaria x ananassa HOM05D001141 ORTHO05D001088 7.9e-16 86.3 51 80.4
Nitab4.5_0004070g0060 Nicotiana tabacum HOM05D001141 ORTHO05D001088 7.9e-16 86.3 51 82.4
Nitab4.5_0006735g0050 Nicotiana tabacum HOM05D001141 ORTHO05D001088 7.9e-16 86.3 51 82.4
HPP92_006422 Vanilla planifolia HOM05D001141 ORTHO05D001088 7.9e-16 86.3 51 82.4
Solyc11g067020.3 Solanum lycopersicum HOM05D001141 ORTHO05D001088 1.0e-15 85.9 51 82.4
Sopen11g026740 Solanum pennellii HOM05D001141 ORTHO05D001088 1.0e-15 85.9 51 82.4
Psat7g190600 Pisum sativum HOM05D001141 ORTHO05D001088 1.8e-15 85.1 53 79.2
FAN08G2496 Fragaria x ananassa HOM05D001141 ORTHO05D001088 2.3e-15 84.7 51 80.4
Glyma.11G187800 Glycine max HOM05D001141 ORTHO05D001088 2.3e-15 84.7 52 82.7
CiPaw.13G139600 Carya illinoinensis HOM05D001141 ORTHO05D001088 3.9e-15 84.0 48 85.4
Glyma.12G086700 Glycine max HOM05D001141 ORTHO05D001088 3.9e-15 84.0 47 87.2
CAN.G644.15 Capsicum annuum HOM05D001141 ORTHO05D001088 5.1e-15 83.6 47 87.2
Duzib170G0871 Durio zibethinus HOM05D001141 ORTHO05D001088 5.1e-15 83.6 53 83.0
PSO384G0561 Papaver somniferum HOM05D001141 ORTHO05D001088 5.1e-15 83.6 53 79.2
ATR0820G066 Amborella trichopoda HOM05D001141 ORTHO05D001088 6.7e-15 83.2 51 80.4
PSO339G1690 Papaver somniferum HOM05D001141 ORTHO05D001088 6.7e-15 83.2 53 79.2
SEGI_08891 Sequoiadendron giganteum HOM05D001141 ORTHO05D001088 6.7e-15 83.2 51 80.4
SGA_v2.0_scaffold93G28391 Striga asiatica HOM05D001141 ORTHO05D001088 6.7e-15 83.2 50 82.0
Lj3g0006335 Lotus japonicus HOM05D001141 ORTHO05D001088 8.7e-15 82.8 47 85.1
Peaxi162Scf01284g00021 Petunia axillaris HOM05D001141 ORTHO05D001088 1.1e-14 82.4 51 78.4
Phvul.011G091100 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 1.1e-14 82.4 52 80.8
Zm00001eb084120 Zea mays HOM05D001141 ORTHO05D001088 1.5e-14 82.0 49 81.6
Sp5g16560 Schrenkiella parvula HOM05D001141 ORTHO05D001088 1.9e-14 81.6 47 85.1
Phvul.008G283200 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 4.3e-14 80.5 52 78.8
VMungo1127G2018 Vigna mungo HOM05D001141 ORTHO05D001088 5.6e-14 80.1 52 78.8
CANSAT54G0090 Cannabis sativa HOM05D001141 ORTHO05D001088 7.4e-14 79.7 51 76.5
Thhalv10002540m.g Eutrema salsugineum HOM05D001141 ORTHO05D001088 7.4e-14 79.7 47 83.0
Sc21g0004760 Simmondsia chinensis HOM05D001141 ORTHO05D001088 7.4e-14 79.7 51 76.5
Carub.0015s0009 Capsella rubella HOM05D001141 ORTHO05D001088 9.6e-14 79.3 47 80.9
Aa31LG4G14330 Aethionema arabicum HOM05D001141 ORTHO05D001088 1.6e-13 78.6 47 83.0
PGSC0003DMG400026529 Solanum tuberosum HOM05D001141 ORTHO05D001088 1.6e-13 78.6 48 79.2
CARHR151500 Cardamine hirsuta HOM05D001141 ORTHO05D001088 2.8e-13 77.8 47 80.9
Pp3c6_5800 Physcomitrium patens HOM05D001141 ORTHO05D001088 3.7e-13 77.4 51 74.5
AT3G44490 Arabidopsis thaliana HOM05D001141 ORTHO05D001088 4.8e-13 77.0 47 80.9
AT3G44660 Arabidopsis thaliana HOM05D001141 ORTHO05D001088 4.8e-13 77.0 47 80.9
SMO351G0377 Selaginella moellendorffii HOM05D001141 ORTHO05D001088 4.8e-13 77.0 51 70.6
AT3G44680 Arabidopsis thaliana HOM05D001141 ORTHO05D001088 8.1e-13 76.3 47 80.9
Dinv42581 Davidia involucrata HOM05D001141 ORTHO05D001088 1.4e-12 75.5 51 76.5
BcaB01g01147 Brassica carinata HOM05D001141 ORTHO05D001088 2.4e-12 74.7 47 78.7
Gohir.A09G094200 Gossypium hirsutum HOM05D001141 ORTHO05D001088 3.1e-12 74.3 53 73.6
BcaC01g02015 Brassica carinata HOM05D001141 ORTHO05D001088 6.9e-12 73.2 47 76.6
A06p21770 Brassica napus HOM05D001141 ORTHO05D001088 6.9e-12 73.2 47 76.6
C03p69490 Brassica napus HOM05D001141 ORTHO05D001088 6.9e-12 73.2 47 76.6
BolC3t19205H Brassica oleracea HOM05D001141 ORTHO05D001088 6.9e-12 73.2 47 76.6
BraA06t25265Z Brassica rapa HOM05D001141 ORTHO05D001088 6.9e-12 73.2 47 76.6
AagrBONN_evm.TU.Sc2ySwM_117.832 Anthoceros agrestis HOM05D001141 ORTHO05D001088 9.0e-12 72.8 51 66.7
THA.LOC104814794 Tarenaya hassleriana HOM05D001141 ORTHO05D001088 9.0e-12 72.8 47 76.6
Oeu035543.3 Olea europaea HOM05D001141 ORTHO05D001088 2.2e-10 68.2 51 70.6
Mapoly0128s0032 Marchantia polymorpha HOM05D001141 ORTHO05D001088 2.4e-09 64.7 49 63.3
CBR_g31431 Chara braunii HOM05D001141 ORTHO05D001088 9.3e-09 62.8 51 62.7
AUR62024759 Chenopodium quinoa HOM05D001141 ORTHO05D001088 3.3e-06 54.3 35 80.0
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 3.3e-06 54.3 38 71.1


User provided reference genes

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