Gene: Sopen11g026740
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g026740
- Transcript Identifier Sopen11g026740.1
- Gene Type Coding gene
- Location Spenn-ch11 : 62544751-62552302 : positive
Gene Family Information
- ID HOM05D001141
- #Genes/#Species 542/100
- Phylogenetic origin
- ID ORTHO05D001088
- #Genes/#Species 493/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g026740.1
Descriptions
- Description Class I RPD3 type protein | histone deacetylase 9 (HDA9) | FUNCTIONS IN: histone deacetylase activity | INVOLVED IN: histone deacetylation | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone deacetylase , Histone deacetylase superfamily | BEST Arabidopsis thaliana protein match is: histone deacetylase 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016575 | IEA | InterPro | histone deacetylation | |
| GO:0010187 | ISO | PLAZA Integrative Orthology | negative regulation of seed germination | AT3G44680 |
| GO:1900055 | ISO | PLAZA Integrative Orthology | regulation of leaf senescence | AT3G44680 |
| GO:1990619 | ISO | PLAZA Integrative Orthology | histone H3-K9 deacetylation | AT3G44680 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004407 | IEA | InterPro | histone deacetylase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G44680 |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT3G44680 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G44680 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G44680 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G44680 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.2.1.1.1.1 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.deacetylase component HDA9 |
| 12.3.2.1.1.3 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8) |