Gene: AT3G44680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G44680
  • Transcript Identifier AT3G44680.1
  • Gene Type Coding gene
  • Location Chr3 : 16226769-16229752 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G44680.1
  • symbol HDA9
  • Alias AtHDA9,HDA09
  • uniprot Q8H0W2

Descriptions

  • Description histone deacetylase 9
  • Computational description histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IEA
InterProhistone deacetylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:1990619
IMP
Gene Ontologyhistone H3-K9 deacetylation1
GO:1900055
IMP
Gene Ontologyregulation of leaf senescence1
GO:0010187
IMP
Gene Ontologynegative regulation of seed germination2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004407
IEA
GOA Databasehistone deacetylase activity
GO:0004407
ISS
Gene Ontologyhistone deacetylase activity3
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008270
ISS
Gene Ontologyzinc ion binding4
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0032041
IEA
Gene OntologyNAD-dependent histone deacetylase activity (H3-K14 specific)

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
IDA
Gene Ontologycytosol6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm6
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037138 Histone deacetylase domain superfamily
IPR003084 Histone deacetylase
IPR000286 Histone deacetylase family
IPR023801 Histone deacetylase domain
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.1.1.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.deacetylase component HDA9
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)