Gene: TWI79G1505

General Information

Structural Information

Species Tripterygium wilfordii
Gene Identifier TWI79G1505
Transcript Identifier TWI79G1505.02
Gene Type Coding gene
Location NC_052238.1 : 2391574-2396274 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D001141
#Genes/#Species 542/100
Phylogenetic origin

ID ORTHO05D001088
#Genes/#Species 493/100
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate
Block Duplication Block duplicate

Labels

Identifiers

tid rna-XM_038849867.1
id gene-LOC120001502
Dbxref GeneID:120001502
Dbxref GeneID:120001502,Genbank:XM_038849867.1
pid XP_038705795.1

Descriptions

Short descriptions
Ortholog descriptions

product histone deacetylase 9, transcript variant X1

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016575	IEA	InterPro	histone deacetylation
GO:0010187	ISO	PLAZA Integrative Orthology	negative regulation of seed germination	AT3G44680
GO:1900055	ISO	PLAZA Integrative Orthology	regulation of leaf senescence	AT3G44680
GO:1990619	ISO	PLAZA Integrative Orthology	histone H3-K9 deacetylation	AT3G44680

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0004407	IEA	InterPro	histone deacetylase activity
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G44680
GO:0043565	ISO	PLAZA Integrative Orthology	sequence-specific DNA binding	AT3G44680

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G44680
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT3G44680
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT3G44680

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003084	Histone deacetylase
IPR023696	Ureohydrolase domain superfamily
IPR037138	Histone deacetylase domain superfamily
IPR023801	Histone deacetylase domain
IPR000286	Histone deacetylase family

Mapman id	Description
12.3.2.1.1.1.1	Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.deacetylase component HDA9
12.3.2.1.1.3	Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)