Gene: TPR.G15586

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G15586
  • Transcript Identifier TPR.T16109
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_scaf_251 : 113290-119586 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA16109.v2
  • id Tp57577_TGAC_v2_gene15586.v2
  • pacid 35951497
  • uniprot A0A2K3MSQ0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IEA
InterProhistone deacetylation
GO:0070932
IEA
GOA Databasehistone H3 deacetylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT3G44680
GO:1900055
ISO
PLAZA Integrative Orthologyregulation of leaf senescence AT3G44680
GO:1990619
ISO
PLAZA Integrative Orthologyhistone H3-K9 deacetylation AT3G44680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004407
IEA
GOA Databasehistone deacetylase activity
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0032041
IEA
GOA DatabaseNAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G44680
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G44680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G44680
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G44680
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G44680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023696 Ureohydrolase domain superfamily
IPR023801 Histone deacetylase domain
IPR003084 Histone deacetylase
IPR037138 Histone deacetylase domain superfamily
IPR000286 Histone deacetylase family
Mapman id Description
12.3.2.1.1.1.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.HDA9-PWR deacetylation complex.deacetylase component HDA9
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)